MIR3162 (microRNA 3162) - Rat Genome Database
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Gene: MIR3162 (microRNA 3162) Homo sapiens
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Symbol: MIR3162
Name: microRNA 3162
RGD ID: 4109028
HGNC Page HGNC
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-3162
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1159,595,077 - 59,595,158 (-)EnsemblGRCh38hg38GRCh38
GRCh381159,595,077 - 59,595,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371159,362,550 - 59,362,631 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1156,725,288 - 56,725,369 (-)NCBI
Cytogenetic Map11q12.1NCBI
HuRef1155,709,959 - 55,710,040 (-)NCBIHuRef
CHM1_11159,228,557 - 59,228,638 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
doxorubicin  (EXP)

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:20300190   PMID:21037258   PMID:21199797   PMID:26959414   PMID:29627523   PMID:31018918  


Genomics

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:54868
Count of gene targets:16290
Count of transcripts:37450
Interacting mature miRNAs:hsa-miR-3162-3p, hsa-miR-3162-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 4
Low 54 31 62 31 169 33 67 25 60 40 83 88 2 9 28 2
Below cutoff 33 26 16 4 21 4 33 29 33 9 19 26 1 9 15 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000581818
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1159,595,077 - 59,595,158 (-)Ensembl
RefSeq Acc Id: NR_036120
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381159,595,077 - 59,595,158 (-)NCBI
GRCh371159,362,550 - 59,362,631 (-)RGD
Celera1156,725,288 - 56,725,369 (-)RGD
HuRef1155,709,959 - 55,710,040 (-)RGD
CHM1_11159,228,557 - 59,228,638 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC MIR3162 COSMIC
Ensembl Genes ENSG00000264559 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000581818 ENTREZGENE
GTEx ENSG00000264559 GTEx
HGNC ID HGNC:38271 ENTREZGENE
Human Proteome Map MIR3162 Human Proteome Map
miRBase MI0014192 ENTREZGENE
NCBI Gene 100422880 ENTREZGENE
PharmGKB PA165543468 PharmGKB
RNAcentral URS0000157FBE RNACentral
  URS00001E2938 RNACentral
  URS000075EF55 RNACentral