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References
Genomics
miRNA Target Status
Predicted Targets
Summary Value | Count of predictions: | 33986 | Count of gene targets: | 14759 | Count of transcripts: | 30445 | Interacting mature miRNAs: | hsa-miR-3142 | Prediction methods: | Microtar, Miranda, Pita, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | adipose tissue | |
High | |||||||||||||
Medium | 1 | 6 | 1 | ||||||||||
Low | 9 | 1 | 6 | 2 | 89 | 2 | 32 | 1 | 3 | 3 | 4 | 7 | |
Below cutoff | 2 | 2 | 15 | 1 | 5 | 1 | 3 | 7 | 3 | 2 | 1 |
Sequence
Nucleotide Sequences
RefSeq Transcripts | NR_036095 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AC091842 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
RefSeq Acc Id: | ENST00000582487 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_036095 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Clinical Variants
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 5q33.3-35.3(chr5:156825512-181269805)x3 | copy number gain | See cases [RCV000133847] | Chr5:156825512..181269805 [GRCh38] Chr5:156252523..180696806 [GRCh37] Chr5:156185101..180629412 [NCBI36] Chr5:5q33.3-35.3 |
pathogenic |
GRCh38/hg38 5q33.1-34(chr5:152443869-166104392)x1 | copy number loss | See cases [RCV000138282] | Chr5:152443869..166104392 [GRCh38] Chr5:151823430..165531397 [GRCh37] Chr5:151803623..165463975 [NCBI36] Chr5:5q33.1-34 |
pathogenic |
GRCh38/hg38 5q33.3-34(chr5:158941354-164386760)x1 | copy number loss | See cases [RCV000138895] | Chr5:158941354..164386760 [GRCh38] Chr5:158368362..163813766 [GRCh37] Chr5:158300940..163746344 [NCBI36] Chr5:5q33.3-34 |
pathogenic |
GRCh38/hg38 5q32-35.3(chr5:149714592-181272151)x3 | copy number gain | See cases [RCV000051863] | Chr5:149714592..181272151 [GRCh38] Chr5:149094155..180699152 [GRCh37] Chr5:149074348..180631758 [NCBI36] Chr5:5q32-35.3 |
pathogenic |
GRCh38/hg38 5q33.3-35.3(chr5:160029980-181269805)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]|See cases [RCV000051865] | Chr5:160029980..181269805 [GRCh38] Chr5:159456987..180696806 [GRCh37] Chr5:159389565..180629412 [NCBI36] Chr5:5q33.3-35.3 |
pathogenic |
GRCh38/hg38 5q33.1-34(chr5:152761187-167248053)x1 | copy number loss | See cases [RCV000052144] | Chr5:152761187..167248053 [GRCh38] Chr5:152140747..166675058 [GRCh37] Chr5:152120940..166607636 [NCBI36] Chr5:5q33.1-34 |
pathogenic |
GRCh38/hg38 5q33.1-34(chr5:153195314-164014005)x1 | copy number loss | See cases [RCV000052145] | Chr5:153195314..164014005 [GRCh38] Chr5:152574874..163441011 [GRCh37] Chr5:152555067..163373589 [NCBI36] Chr5:5q33.1-34 |
pathogenic |
Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | MIR3142 | COSMIC |
Ensembl Genes | ENSG00000265237 | Ensembl |
GTEx | ENSG00000265237 | GTEx |
HGNC ID | HGNC:38297 | ENTREZGENE |
Human Proteome Map | MIR3142 | Human Proteome Map |
miRBase | MI0014166 | ENTREZGENE |
NCBI Gene | 100422938 | ENTREZGENE |
PharmGKB | PA165660380 | PharmGKB |
RNAcentral | URS000075AADA | RNACentral |
URS000075C0E1 | RNACentral |