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Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
References
Additional References at PubMed
Genomics
Position Markers
miRNA Target Status
Predicted Targets
Summary Value | Count of predictions: | 73912 | Count of gene targets: | 20620 | Count of transcripts: | 54700 | Interacting mature miRNAs: | hsa-miR-3189-3p, hsa-miR-3189-5p | Prediction methods: | Microtar, Miranda, Pita, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | adipose tissue | appendage | entire extraembryonic component | |
High | ||||||||||||||||
Medium | 103 | 101 | 90 | 13 | 93 | 36 | 3 | 7 | 128 | 62 | 52 | 3 | ||||
Low | 103 | 20 | 140 | 98 | 146 | 100 | 189 | 28 | 65 | 145 | 163 | 198 | 3 | 23 | 20 | 1 |
Below cutoff | 12 | 18 | 7 | 6 | 26 | 2 | 21 | 22 | 26 | 12 | 10 | 12 | 4 | 9 | 15 |
Sequence
Nucleotide Sequences
Reference Sequences
RefSeq Acc Id: | ENST00000578735 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_036156 | ||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Clinical Variants
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3 | copy number gain | See cases [RCV000133888] | Chr19:11227942..44626354 [GRCh38] Chr19:11338618..45129651 [GRCh37] Chr19:11199618..49821491 [NCBI36] Chr19:19p13.2-q13.31 |
pathogenic |
GRCh38/hg38 19p13.12-12(chr19:15133594-24193591)x3 | copy number gain | See cases [RCV000136696] | Chr19:15133594..24193591 [GRCh38] Chr19:15244405..24376393 [GRCh37] Chr19:15105405..24168233 [NCBI36] Chr19:19p13.12-12 |
pathogenic|likely pathogenic |
GRCh38/hg38 19p13.11(chr19:18133970-18424117)x1 | copy number loss | See cases [RCV000142944] | Chr19:18133970..18424117 [GRCh38] Chr19:18244780..18534927 [GRCh37] Chr19:18105780..18395927 [NCBI36] Chr19:19p13.11 |
uncertain significance |
GRCh38/hg38 19p13.11-q13.11(chr19:17176767-34924150)x3 | copy number gain | See cases [RCV000050635] | Chr19:17176767..34924150 [GRCh38] Chr19:17287576..35415054 [GRCh37] Chr19:17148576..40106894 [NCBI36] Chr19:19p13.11-q13.11 |
pathogenic |
GRCh38/hg38 19p13.12-q11(chr19:13974677-27839676)x3 | copy number gain | See cases [RCV000052912] | Chr19:13974677..27839676 [GRCh38] Chr19:14085489..28330584 [GRCh37] Chr19:13946489..33022424 [NCBI36] Chr19:19p13.12-q11 |
pathogenic |
GRCh38/hg38 19p13.11(chr19:17922234-18463153)x1 | copy number loss | See cases [RCV000053946] | Chr19:17922234..18463153 [GRCh38] Chr19:18033043..18573963 [GRCh37] Chr19:17894043..18434963 [NCBI36] Chr19:19p13.11 |
pathogenic |
Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | MIR3189 | COSMIC |
Ensembl Genes | ENSG00000264175 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000578735 | ENTREZGENE |
GTEx | ENSG00000264175 | GTEx |
HGNC ID | HGNC:38307 | ENTREZGENE |
Human Proteome Map | MIR3189 | Human Proteome Map |
miRBase | MI0014233 | ENTREZGENE |
NCBI Gene | 100422943 | ENTREZGENE |
PharmGKB | PA165393774 | PharmGKB |
RNAcentral | URS00001B12A4 | RNACentral |
URS000054ED3F | RNACentral | |
URS000075DBDF | RNACentral |