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References
References - curated
Additional References at PubMed
Genomics
miRNA Target Status
Predicted Targets
Summary Value | Count of predictions: | 50256 | Count of gene targets: | 18451 | Count of transcripts: | 41062 | Interacting mature miRNAs: | hsa-miR-3126-3p, hsa-miR-3126-5p | Prediction methods: | Microtar, Miranda, Pita, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | adipose tissue | appendage | |
High | ||||||||||||||
Medium | 1 | 2 | 1 | |||||||||||
Low | 18 | 7 | 14 | 3 | 18 | 3 | 57 | 29 | 45 | 23 | 46 | 43 | 1 | 6 |
Below cutoff | 4 | 2 | 5 | 2 | 7 | 3 | 9 | 5 | 11 | 9 | 5 | 14 | 2 |
Sequence
Nucleotide Sequences
Reference Sequences
RefSeq Acc Id: | ENST00000577443 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_036073 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Clinical Variants
Name | Type | Condition(s) | Position(s) | Clinical significance |
NM_032208.2(ANTXR1):c.801C>T (p.Leu267=) | single nucleotide variant | Malignant melanoma [RCV000060596] | Chr2:69102939 [GRCh38] Chr2:69330071 [GRCh37] Chr2:69183575 [NCBI36] Chr2:2p13.3 |
not provided |
NM_032208.2(ANTXR1):c.802A>T (p.Asn268Tyr) | single nucleotide variant | Malignant melanoma [RCV000065645] | Chr2:69102940 [GRCh38] Chr2:69330072 [GRCh37] Chr2:69183576 [NCBI36] Chr2:2p13.3 |
not provided |
GRCh38/hg38 2p16.1-11.2(chr2:58279519-83586962)x3 | copy number gain | See cases [RCV000136053] | Chr2:58279519..83586962 [GRCh38] Chr2:58506654..83814086 [GRCh37] Chr2:58360158..83667597 [NCBI36] Chr2:2p16.1-11.2 |
pathogenic |
GRCh38/hg38 2p16.3-11.2(chr2:47620388-86702722)x3 | copy number gain | See cases [RCV000137586] | Chr2:47620388..86702722 [GRCh38] Chr2:47847527..86929845 [GRCh37] Chr2:47701031..86783356 [NCBI36] Chr2:2p16.3-11.2 |
uncertain significance |
GRCh38/hg38 2p14-13.3(chr2:64587095-69876311)x1 | copy number loss | See cases [RCV000140691] | Chr2:64587095..69876311 [GRCh38] Chr2:64814229..70103443 [GRCh37] Chr2:64667733..69956947 [NCBI36] Chr2:2p14-13.3 |
likely pathogenic |
GRCh38/hg38 2p25.1-11.2(chr2:7495123-87705899)x3 | copy number gain | See cases [RCV000141494] | Chr2:7495123..87705899 [GRCh38] Chr2:7635254..88005418 [GRCh37] Chr2:7552705..87786533 [NCBI36] Chr2:2p25.1-11.2 |
benign |
Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | MIR3126 | COSMIC |
Ensembl Genes | ENSG00000266649 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000577443 | ENTREZGENE |
GTEx | ENSG00000266649 | GTEx |
HGNC ID | HGNC:38225 | ENTREZGENE |
Human Proteome Map | MIR3126 | Human Proteome Map |
miRBase | MI0014143 | ENTREZGENE |
NCBI Gene | 100423030 | ENTREZGENE |
PharmGKB | PA165696807 | PharmGKB |
RNAcentral | URS0000022AAA | RNACentral |
URS0000052E4D | RNACentral | |
URS000075DA6A | RNACentral |