LOC120095806 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120095806 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120095806
Name: U6 spliceosomal RNA
RGD ID: 41063304
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81145,283,445 - 45,283,551 (-)NCBIGRCr8
mRatBN7.21131,797,545 - 31,797,651 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1131,797,545 - 31,797,651 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120095806
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81145,283,445 - 45,283,551 (-)NCBIGRCr8
mRatBN7.21131,797,545 - 31,797,651 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1131,797,545 - 31,797,651 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map11q11NCBI
RNU6-737P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381857,284,603 - 57,284,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1857,284,602 - 57,284,708 (-)EnsemblGRCh38hg38GRCh38
GRCh371854,951,834 - 54,951,938 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q21.31NCBI
CHM1_11854,945,779 - 54,945,883 (-)NCBICHM1_1
T2T-CHM13v2.01857,485,461 - 57,485,565 (-)NCBIT2T-CHM13v2.0
Gm25577
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912118,468,663 - 118,468,769 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12118,468,663 - 118,468,769 (-)EnsemblGRCm39 Ensembl
GRCm3812118,504,928 - 118,505,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12118,504,928 - 118,505,034 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12F2NCBI
LOC119868624
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0X92,425,032 - 92,425,134 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX92,425,032 - 92,425,134 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X89,877,947 - 89,878,052 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X91,629,867 - 91,629,972 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X91,365,290 - 91,365,392 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120095806
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005491570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000101196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1131,797,545 - 31,797,651 (-)Ensembl
RefSeq Acc Id: XR_005491570
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81145,283,445 - 45,283,551 (-)NCBI
mRatBN7.21131,797,545 - 31,797,651 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-21831 BioCyc
Ensembl Genes ENSRNOG00000065454 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000101196 ENTREZGENE
NCBI Gene LOC120095806 ENTREZGENE
PhenoGen LOC120095806 PhenoGen
RatGTEx ENSRNOG00000065454 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120095806  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL