MTRNR2L13 (MT-RNR2 like 13 (pseudogene)) - Rat Genome Database

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Gene: MTRNR2L13 (MT-RNR2 like 13 (pseudogene)) Homo sapiens
Analyze
Symbol: MTRNR2L13
Name: MT-RNR2 like 13 (pseudogene) (Ensembl:MT-RNR2 like 13)
RGD ID: 4105533
HGNC Page HGNC:37170
Description: Predicted to enable receptor antagonist activity. Predicted to be involved in negative regulation of execution phase of apoptosis. Predicted to be located in cytoplasm and extracellular region.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: HN13; MT-RNR2 like 13; MT-RNR2-like 13
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: It is unclear if this is a transcribed protein-coding gene, or if it is a nuclear pseudogene of the mitochondrial MT-RNR2 gene. [14 Oct 2021]
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384116,298,860 - 116,300,322 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4116,298,876 - 116,300,320 (+)EnsemblGRCh38hg38GRCh38
GRCh374117,220,016 - 117,221,478 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera4114,512,304 - 114,513,766 (+)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4112,954,196 - 112,955,983 (+)NCBIHuRef
CHM1_14117,196,464 - 117,197,926 (+)NCBICHM1_1
T2T-CHM13v2.04119,601,855 - 119,603,317 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11371646   PMID:12009529   PMID:19477263   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:113
Interacting mature miRNAs:116
Transcripts:ENST00000604093
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 2
Below cutoff 77 117 36 11 34 9 124 119 343 21 89 25 2 27 90

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000604093   ⟹   ENSP00000474570
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4116,298,876 - 116,300,320 (+)Ensembl
Protein Sequences
GenBank Protein S4R3P1 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSP00000474570   ⟸   ENST00000604093

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-S4R3P1-F1-model_v2 AlphaFold S4R3P1 1-24 view protein structure


Additional Information

Database Acc Id Source(s)
COSMIC MTRNR2L13 COSMIC
Ensembl Genes ENSG00000270394 Ensembl
GTEx ENSG00000270394 GTEx
HGNC ID HGNC:37170 ENTREZGENE
Human Proteome Map MTRNR2L13 Human Proteome Map
InterPro Humanin UniProtKB/Swiss-Prot
NCBI Gene 100463500 ENTREZGENE
PANTHER HUMANIN-LIKE 13 UniProtKB/Swiss-Prot
  PTHR33895 UniProtKB/Swiss-Prot
Pfam Humanin UniProtKB/Swiss-Prot
PharmGKB PA166123705 PharmGKB
UniProt HMN13_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-01 MTRNR2L13  MT-RNR2 like 13 (pseudogene)  MTRNR2L13  MT-RNR2 like 13  Symbol and/or name change 19259463 PROVISIONAL
2018-01-30 MTRNR2L13  MT-RNR2 like 13    MT-RNR2-like 13  Symbol and/or name change 5135510 APPROVED
2014-03-05 MTRNR2L13  MT-RNR2-like 13    MT-RNR2-like 13 (pseudogene)  Symbol and/or name change 5135510 APPROVED
2011-07-27 MTRNR2L13  MT-RNR2-like 13 (pseudogene)  MTRNR2L13  MT-RNR2-like 13  Symbol and/or name change 5135510 APPROVED