LOC120099041 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120099041 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120099041
Name: U6 spliceosomal RNA
RGD ID: 41043910
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82045,360,579 - 45,360,685 (+)NCBIGRCr8
mRatBN7.22043,806,078 - 43,806,184 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,806,078 - 43,806,184 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map20q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120099041
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82045,360,579 - 45,360,685 (+)NCBIGRCr8
mRatBN7.22043,806,078 - 43,806,184 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,806,078 - 43,806,184 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map20q12NCBI
RNU6-364P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38796,341,140 - 96,341,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl796,341,140 - 96,341,246 (+)EnsemblGRCh38hg38GRCh38
GRCh37795,970,452 - 95,970,558 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q21.3NCBI
CHM1_1795,900,485 - 95,900,591 (+)NCBICHM1_1
T2T-CHM13v2.0797,577,035 - 97,577,141 (+)NCBIT2T-CHM13v2.0
Gm22281
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,614,647 - 63,614,749 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,614,647 - 63,614,749 (-)EnsemblGRCm39 Ensembl
GRCm38163,575,488 - 63,575,590 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,575,488 - 63,575,590 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1C2NCBI

Variants

.
Variants in LOC120099041
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000111773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2043,806,078 - 43,806,184 (+)Ensembl
RefSeq Acc Id: XR_005497864
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,360,579 - 45,360,685 (+)NCBI
mRatBN7.22043,806,078 - 43,806,184 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3424 BioCyc
Ensembl Genes ENSRNOG00000067147 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000111773 ENTREZGENE
NCBI Gene LOC120099041 ENTREZGENE
PhenoGen LOC120099041 PhenoGen
RatGTEx ENSRNOG00000067147 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120099041  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL