LOC120100549 (uncharacterized LOC120100549) - Rat Genome Database

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Gene: LOC120100549 (uncharacterized LOC120100549) Rattus norvegicus
Analyze
Symbol: LOC120100549
Name: uncharacterized LOC120100549
RGD ID: 41042083
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8217,548,663 - 17,551,587 (+)NCBIGRCr8
mRatBN7.2215,813,212 - 15,815,878 (+)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120100549
9 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005500382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_005500382
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8217,548,663 - 17,551,587 (+)NCBI
mRatBN7.2215,813,212 - 15,815,878 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54932 BioCyc
NCBI Gene LOC120100549 ENTREZGENE
PhenoGen LOC120100549 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120100549  uncharacterized LOC120100549      Symbol and Name status set to provisional 70820 PROVISIONAL