LOC120098716 (5S ribosomal RNA) - Rat Genome Database

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Gene: LOC120098716 (5S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120098716
Name: 5S ribosomal RNA
RGD ID: 41016926
Description:
Type: rrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,493,215 - 68,493,333 (-)NCBIGRCr8
mRatBN7.21951,601,273 - 51,601,391 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,601,273 - 51,601,391 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000112590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,601,273 - 51,601,391 (-)Ensembl
RefSeq Acc Id: XR_005497134
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,493,215 - 68,493,333 (-)NCBI
mRatBN7.21951,601,273 - 51,601,391 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5288 BioCyc
Ensembl Genes ENSRNOG00000065423 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000112590 ENTREZGENE
NCBI Gene LOC120098716 ENTREZGENE
PhenoGen LOC120098716 PhenoGen
RatGTEx ENSRNOG00000065423 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120098716  5S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL