Snord71 (small nucleolar RNA, C/D box 71) - Rat Genome Database

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Gene: Snord71 (small nucleolar RNA, C/D box 71) Rattus norvegicus
Analyze
Symbol: Snord71
Name: small nucleolar RNA, C/D box 71
RGD ID: 41012179
Description: INTERACTS WITH 2-hydroxypropanoic acid (ortholog); benzo[a]pyrene (ortholog); DDT (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120098706; small nucleolar RNA SNORD71
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81954,716,325 - 54,716,408 (+)NCBIGRCr8
mRatBN7.21937,806,869 - 37,806,952 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1937,806,869 - 37,806,952 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1941,824,839 - 41,824,922 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord71
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81954,716,325 - 54,716,408 (+)NCBIGRCr8
mRatBN7.21937,806,869 - 37,806,952 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1937,806,869 - 37,806,952 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1941,824,839 - 41,824,922 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map19q12NCBI
SNORD71
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,758,402 - 71,758,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1671,758,402 - 71,758,487 (-)EnsemblGRCh38hg38GRCh38
GRCh371671,792,305 - 71,792,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,349,806 - 70,349,891 (-)NCBINCBI36Build 36hg18NCBI36
Celera1656,108,468 - 56,108,553 (-)NCBICelera
Cytogenetic Map16q22.2NCBI
HuRef1657,560,102 - 57,560,187 (-)NCBIHuRef
CHM1_11673,205,182 - 73,205,267 (-)NCBICHM1_1
T2T-CHM13v2.01677,575,597 - 77,575,682 (-)NCBIT2T-CHM13v2.0
Snord71
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,565,944 - 110,566,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8110,565,927 - 110,566,011 (+)EnsemblGRCm39 Ensembl
GRCm388109,839,312 - 109,839,375 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8109,839,295 - 109,839,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv378112,363,212 - 112,363,275 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera8114,064,807 - 114,064,870 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map857.3NCBI
LOC119872070
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha577,496,245 - 77,496,329 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0577,974,333 - 77,974,417 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl577,974,333 - 77,974,417 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1577,794,544 - 77,794,628 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0577,617,278 - 77,617,362 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0578,116,481 - 78,116,565 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1937,806,869 - 37,806,952 (+)Ensembl
RefSeq Acc Id: XR_005497124
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81954,716,325 - 54,716,408 (+)NCBI
mRatBN7.21937,806,869 - 37,806,952 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5707 BioCyc
Ensembl Genes ENSRNOG00000059926 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082476 ENTREZGENE
NCBI Gene LOC120098706 ENTREZGENE
PhenoGen Snord71 PhenoGen
RatGTEx ENSRNOG00000059926 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snord71  small nucleolar RNA, C/D box 71  LOC120098706  small nucleolar RNA SNORD71  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120098706  small nucleolar RNA SNORD71  Snord71  small nucleolar RNA, C/D box 71  Data merged from RGD:15012931 737654 PROVISIONAL
2021-01-26 LOC120098706  small nucleolar RNA SNORD71      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord71  small nucleolar RNA, C/D box 71      Symbol and Name status set to provisional 45752 PROVISIONAL