LOC120094816 (zinc finger protein 431-like) - Rat Genome Database

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Gene: LOC120094816 (zinc finger protein 431-like) Rattus norvegicus
Analyze
Symbol: LOC120094816 (Ensembl: LOC120094815)
Name: zinc finger protein 431-like
RGD ID: 40991655
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89120,987,801 - 121,008,013 (+)NCBIGRCr8
mRatBN7.29113,540,626 - 113,561,410 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9113,440,157 - 113,676,688 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

Genomics

Variants

.
Variants in LOC120094816
10 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039084927   ⟹   XP_038940855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89120,987,801 - 121,008,013 (+)NCBI
mRatBN7.29113,541,367 - 113,561,410 (+)NCBI
RefSeq Acc Id: XM_039084928   ⟹   XP_038940856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89120,987,848 - 121,004,959 (+)NCBI
mRatBN7.29113,541,367 - 113,558,217 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038940855   ⟸   XM_039084927
- Peptide Label: isoform X1
- UniProtKB: A6KU90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940856   ⟸   XM_039084928
- Peptide Label: isoform X2
- UniProtKB: A6KU89 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   KRAB

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26297 BioCyc
Ensembl Genes ENSRNOG00000067344 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000096393.1 UniProtKB/TrEMBL
  ENSRNOT00000099161.1 UniProtKB/TrEMBL
  ENSRNOT00000101323.1 UniProtKB/TrEMBL
  ENSRNOT00000106577.1 UniProtKB/TrEMBL
  ENSRNOT00000109367.1 UniProtKB/TrEMBL
  ENSRNOT00000110819.1 UniProtKB/TrEMBL
  ENSRNOT00000113468.1 UniProtKB/TrEMBL
  ENSRNOT00000115615.1 UniProtKB/TrEMBL
  ENSRNOT00000117684.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC120094816 ENTREZGENE
PANTHER EXPRESSED SEQUENCE AI987944-RELATED UniProtKB/TrEMBL
  GENE 10130-RELATED UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  RH47711P-RELATED UniProtKB/TrEMBL
  RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 936 UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen LOC120094816 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067344 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZQK4_RAT UniProtKB/TrEMBL
  A0A8I6A000_RAT UniProtKB/TrEMBL
  A0A8I6A0Y8_RAT UniProtKB/TrEMBL
  A0A8I6A323_RAT UniProtKB/TrEMBL
  A0A8I6A4T2_RAT UniProtKB/TrEMBL
  A0A8I6AK80_RAT UniProtKB/TrEMBL
  A0A8I6ASP8_RAT UniProtKB/TrEMBL
  A0A8I6B1M0_RAT UniProtKB/TrEMBL
  A6KU89 ENTREZGENE, UniProtKB/TrEMBL
  A6KU90 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-26 LOC120094816  zinc finger protein 431-like      Symbol and Name status set to provisional 70820 PROVISIONAL