Snord105b (small nucleolar RNA, C/D box 105B) - Rat Genome Database

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Gene: Snord105b (small nucleolar RNA, C/D box 105B) Rattus norvegicus
Analyze
Symbol: Snord105b (Ensembl: LOC120094528)
Name: small nucleolar RNA, C/D box 105B (Ensembl:small nucleolar RNA U105B)
RGD ID: 40945856
Description: INTERACTS WITH valproic acid (ortholog); versicolorin A (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm23008; LOC120094528; predicted gene, 23008; small nucleolar RNA U105B
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,702,484 - 27,702,563 (+)NCBIGRCr8
mRatBN7.2819,426,298 - 19,426,377 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,426,298 - 19,426,377 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl821,908,202 - 21,908,281 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord105b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,702,484 - 27,702,563 (+)NCBIGRCr8
mRatBN7.2819,426,298 - 19,426,377 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,426,298 - 19,426,377 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl821,908,202 - 21,908,281 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q13NCBI
SNORD105B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,109,749 - 10,109,840 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,109,757 - 10,109,835 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,220,425 - 10,220,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,220,425 - 10,220,516 (+)NCBINCBI36Build 36hg18NCBI36
Celera1910,115,916 - 10,116,007 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef199,801,071 - 9,801,162 (+)NCBIHuRef
CHM1_11910,220,707 - 10,220,798 (+)NCBICHM1_1
T2T-CHM13v2.01910,235,958 - 10,236,049 (+)NCBIT2T-CHM13v2.0
Gm23008
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39920,802,053 - 20,802,132 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl920,802,053 - 20,802,132 (+)EnsemblGRCm39 Ensembl
GRCm38920,890,757 - 20,890,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl920,890,757 - 20,890,836 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9A3NCBI
LOC119864800
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2050,820,089 - 50,820,168 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,472,349 - 51,472,428 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,472,349 - 51,472,428 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,680,009 - 50,680,088 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02051,107,255 - 51,107,334 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,348,145 - 51,348,224 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005488821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000086228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl819,426,298 - 19,426,377 (+)Ensembl
RefSeq Acc Id: XR_005488821
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,702,484 - 27,702,563 (+)NCBI
mRatBN7.2819,426,298 - 19,426,377 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31451 BioCyc
Ensembl Genes ENSRNOG00000055949 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000086228 ENTREZGENE
NCBI Gene LOC120094528 ENTREZGENE
PhenoGen Snord105b PhenoGen
RatGTEx ENSRNOG00000055949 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-04-11 Snord105b  small nucleolar RNA, C/D box 105B  LOC120094528  small nucleolar RNA U105B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120094528  small nucleolar RNA U105B  Gm23008  predicted gene, 23008  Data merged from RGD:15009853 737654 PROVISIONAL
2021-01-26 LOC120094528  small nucleolar RNA U105B      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm23008  predicted gene, 23008      Symbol and Name status set to provisional 45752 PROVISIONAL