SUPT20HL2 (SUPT20H like 2) - Rat Genome Database

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Gene: SUPT20HL2 (SUPT20H like 2) Canis lupus familiaris
Analyze
Symbol: SUPT20HL2
Name: SUPT20H like 2
RGD ID: 40924504
Description: ENCODES a protein that exhibits transcription coregulator activity (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN SAGA complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative transcription factor SPT20 homolog-like 2
RGD Orthologs
Human
Rat
Bonobo
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0X19,857,410 - 19,863,169 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X19,895,818 - 19,901,586 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X19,928,484 - 19,934,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X19,986,259 - 19,992,032 (+)NCBIUU_Cfam_GSD_1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
SAGA complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SUPT20HL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0X19,857,410 - 19,863,169 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X19,895,818 - 19,901,586 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X19,928,484 - 19,934,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X19,986,259 - 19,992,032 (+)NCBIUU_Cfam_GSD_1.0
SUPT20HL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X24,308,210 - 24,314,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX24,308,210 - 24,314,069 (-)EnsemblGRCh38hg38GRCh38
GRCh37X24,326,327 - 24,332,186 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X24,236,303 - 24,244,963 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX28,451,951 - 28,454,321 (-)NCBICelera
Cytogenetic MapXp22.11NCBI
HuRefX22,071,131 - 22,073,584 (-)NCBIHuRef
CHM1_1X24,360,036 - 24,362,489 (-)NCBICHM1_1
T2T-CHM13v2.0X23,892,398 - 23,898,256 (-)NCBIT2T-CHM13v2.0
Supt20hl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X62,639,354 - 62,647,242 (-)NCBIGRCr8
mRatBN7.2X58,645,548 - 58,653,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX58,646,432 - 58,649,965 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X63,000,322 - 63,006,722 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X63,592,514 - 63,595,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X81,270,442 - 81,274,398 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX59,085,024 - 59,090,017 (-)NCBICelera
Cytogenetic MapXq22NCBI
LOC100971827
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X26,105,719 - 26,145,639 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X26,110,147 - 26,149,026 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X16,906,972 - 16,910,378 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC100737849
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X25,205,891 - 25,210,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X27,457,982 - 27,489,765 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038449147   ⟹   XP_038305075
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X19,857,410 - 19,863,169 (+)NCBI
RefSeq Acc Id: XM_038524815   ⟹   XP_038380743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X19,895,818 - 19,901,586 (+)NCBI
RefSeq Acc Id: XM_038588772   ⟹   XP_038444700
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X19,986,259 - 19,992,032 (+)NCBI
RefSeq Acc Id: XM_038651107   ⟹   XP_038507035
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X19,928,484 - 19,934,428 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038305075 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444700 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00845042616.1
Reference Protein Sequences
RefSeq Acc Id: XP_038380743   ⟸   XM_038524815
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038507035   ⟸   XM_038651107
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038305075   ⟸   XM_038449147
- Peptide Label: isoform X1
- UniProtKB: A0A8I3QYB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444700   ⟸   XM_038588772
- Peptide Label: isoform X1
- UniProtKB: A0A8I3QYB4 (UniProtKB/TrEMBL)
Protein Domains
Spt20-like SEP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845030580 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845054245.1 UniProtKB/TrEMBL
InterPro Spt20 UniProtKB/TrEMBL
  Spt20-like_SEP UniProtKB/TrEMBL
NCBI Gene SUPT20HL2 ENTREZGENE
PANTHER PTHR13526:SF16 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR SPT20 HOMOLOG UniProtKB/TrEMBL
Pfam Spt20 UniProtKB/TrEMBL
UniProt A0A8I3QYB4 ENTREZGENE, UniProtKB/TrEMBL