C30H15orf48 (chromosome 30 C15orf48 homolog) - Rat Genome Database

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Gene: C30H15orf48 (chromosome 30 C15orf48 homolog) Canis lupus familiaris
Analyze
Symbol: C30H15orf48
Name: chromosome 30 C15orf48 homolog
RGD ID: 40923260
Description: INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: normal mucosa of esophagus-specific gene 1 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3011,795,781 - 11,800,915 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,795,781 - 11,800,915 (+)NCBICanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03011,933,399 - 11,938,231 (+)NCBIROS_Cfam_1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
C30H15orf48
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3011,795,781 - 11,800,915 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,795,781 - 11,800,915 (+)NCBICanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03011,933,399 - 11,938,231 (+)NCBIROS_Cfam_1.0
C15orf48
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381545,430,610 - 45,433,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1545,430,579 - 45,448,761 (+)EnsemblGRCh38hg38GRCh38
GRCh371545,722,808 - 45,725,538 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361543,510,055 - 43,512,939 (+)NCBINCBI36Build 36hg18NCBI36
Celera1522,614,182 - 22,617,066 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1522,546,816 - 22,549,736 (+)NCBIHuRef
CHM1_11545,841,714 - 45,844,634 (+)NCBICHM1_1
T2T-CHM13v2.01543,238,782 - 43,241,512 (+)NCBIT2T-CHM13v2.0
AA467197
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392122,479,807 - 122,482,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2122,478,906 - 122,483,111 (+)EnsemblGRCm39 Ensembl
GRCm382122,637,887 - 122,641,076 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,636,986 - 122,641,191 (+)EnsemblGRCm38mm10GRCm38
MGSCv372122,463,623 - 122,466,812 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362122,329,328 - 122,332,519 (+)NCBIMGSCv36mm8
Celera2123,816,707 - 123,819,894 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.64NCBI
C3h15orf48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83130,173,535 - 130,177,088 (+)NCBIGRCr8
mRatBN7.23109,719,952 - 109,723,505 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3109,719,897 - 109,724,006 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3109,719,984 - 109,723,502 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3113,616,305 - 113,619,860 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03122,211,835 - 122,215,390 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03119,872,213 - 119,875,768 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03114,772,603 - 114,776,156 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3114,772,603 - 114,776,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03121,310,711 - 121,314,264 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43109,610,054 - 109,613,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13109,515,626 - 109,519,024 (+)NCBI
Celera3108,597,738 - 108,601,531 (+)NCBICelera
Cytogenetic Map3q35NCBI
CUNH15orf48
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554098,024,171 - 8,026,496 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554098,023,847 - 8,027,043 (-)NCBIChiLan1.0ChiLan1.0
C16H15orf48
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21634,669,919 - 34,673,960 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11538,846,607 - 38,850,645 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01524,378,440 - 24,381,280 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11542,709,122 - 42,712,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1542,709,122 - 42,727,209 (+)Ensemblpanpan1.1panPan2
CUNH15orf48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864090,239,364 - 90,242,501 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364718,087,717 - 8,090,242 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364718,086,731 - 8,090,540 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1H15orf48
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,304,474 - 126,310,749 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,304,461 - 126,307,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21140,915,843 - 140,919,288 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH15orf48
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12637,780,940 - 37,783,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2637,781,021 - 37,783,760 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048103,279,026 - 103,281,987 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH15orf48
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473113,895,942 - 13,898,889 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473113,895,944 - 13,898,944 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000049873   ⟹   ENSCAFP00000040561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3011,795,781 - 11,800,915 (+)Ensembl
RefSeq Acc Id: XM_038442210   ⟹   XP_038298138
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,933,399 - 11,938,231 (+)NCBI
RefSeq Acc Id: XM_038442211   ⟹   XP_038298139
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,933,460 - 11,938,231 (+)NCBI
RefSeq Acc Id: XM_038442212   ⟹   XP_038298140
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,933,443 - 11,938,231 (+)NCBI
RefSeq Acc Id: XM_038442213   ⟹   XP_038298141
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,933,476 - 11,938,231 (+)NCBI
RefSeq Acc Id: XM_038442214   ⟹   XP_038298142
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,933,453 - 11,938,231 (+)NCBI
RefSeq Acc Id: XM_038442215   ⟹   XP_038298143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,933,463 - 11,938,231 (+)NCBI
RefSeq Acc Id: XM_038442216   ⟹   XP_038298144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,933,452 - 11,938,231 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000040561   ⟸   ENSCAFT00000049873
RefSeq Acc Id: XP_038298138   ⟸   XM_038442210
- UniProtKB: A0A8C0LBL8 (UniProtKB/TrEMBL),   A0A8C0N9H4 (UniProtKB/TrEMBL),   A0A8C0KF79 (UniProtKB/TrEMBL),   A0A8C0YZS6 (UniProtKB/TrEMBL),   A0A8I3NDE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298140   ⟸   XM_038442212
- UniProtKB: A0A8C0LBL8 (UniProtKB/TrEMBL),   A0A8C0N9H4 (UniProtKB/TrEMBL),   A0A8C0KF79 (UniProtKB/TrEMBL),   A0A8C0YZS6 (UniProtKB/TrEMBL),   A0A8I3NDE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298144   ⟸   XM_038442216
- UniProtKB: A0A8C0LBL8 (UniProtKB/TrEMBL),   A0A8C0N9H4 (UniProtKB/TrEMBL),   A0A8C0KF79 (UniProtKB/TrEMBL),   A0A8C0YZS6 (UniProtKB/TrEMBL),   A0A8I3NDE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298142   ⟸   XM_038442214
- UniProtKB: A0A8C0LBL8 (UniProtKB/TrEMBL),   A0A8C0N9H4 (UniProtKB/TrEMBL),   A0A8C0KF79 (UniProtKB/TrEMBL),   A0A8C0YZS6 (UniProtKB/TrEMBL),   A0A8I3NDE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298139   ⟸   XM_038442211
- UniProtKB: A0A8C0LBL8 (UniProtKB/TrEMBL),   A0A8C0N9H4 (UniProtKB/TrEMBL),   A0A8C0KF79 (UniProtKB/TrEMBL),   A0A8C0YZS6 (UniProtKB/TrEMBL),   A0A8I3NDE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298143   ⟸   XM_038442215
- UniProtKB: A0A8C0LBL8 (UniProtKB/TrEMBL),   A0A8C0N9H4 (UniProtKB/TrEMBL),   A0A8C0KF79 (UniProtKB/TrEMBL),   A0A8C0YZS6 (UniProtKB/TrEMBL),   A0A8I3NDE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298141   ⟸   XM_038442213
- UniProtKB: A0A8C0LBL8 (UniProtKB/TrEMBL),   A0A8C0N9H4 (UniProtKB/TrEMBL),   A0A8C0KF79 (UniProtKB/TrEMBL),   A0A8C0YZS6 (UniProtKB/TrEMBL),   A0A8I3NDE5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016545 UniProtKB/TrEMBL
  ENSCAFG00000031501 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002862 UniProtKB/TrEMBL
  ENSCAFG00030012572 UniProtKB/TrEMBL
  ENSCAFG00040016358 UniProtKB/TrEMBL
  ENSCAFG00040023238 UniProtKB/TrEMBL
  ENSCAFG00845011366 UniProtKB/TrEMBL
  ENSCAFG00845030762 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026199.4 UniProtKB/TrEMBL
  ENSCAFT00000049873.3 UniProtKB/TrEMBL
  ENSCAFT00030005319.1 UniProtKB/TrEMBL
  ENSCAFT00030023287.1 UniProtKB/TrEMBL
  ENSCAFT00040030153.1 UniProtKB/TrEMBL
  ENSCAFT00040043165.1 UniProtKB/TrEMBL
  ENSCAFT00845020138.1 UniProtKB/TrEMBL
  ENSCAFT00845054632.1 UniProtKB/TrEMBL
InterPro B12D UniProtKB/TrEMBL
NCBI Gene C30H15orf48 ENTREZGENE
PANTHER NORMAL MUCOSA OF ESOPHAGUS-SPECIFIC GENE 1 PROTEIN UniProtKB/TrEMBL
  PTHR14256 UniProtKB/TrEMBL
Pfam B12D UniProtKB/TrEMBL
UniProt A0A8C0KF79 ENTREZGENE
  A0A8C0LBL8 ENTREZGENE
  A0A8C0N9H4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YZS6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NDE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QAR5_CANLF UniProtKB/TrEMBL
  A0A8P0SUS5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:59105 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 C30H15orf48  chromosome 30 C15orf48 homolog  C30H15orf48  chromosome 30 C15orf48 homolog  Data merged from RGD:15036869 737654 PROVISIONAL