PGP (phosphoglycolate phosphatase) - Rat Genome Database

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Gene: PGP (phosphoglycolate phosphatase) Canis lupus familiaris
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Symbol: PGP
Name: phosphoglycolate phosphatase
RGD ID: 40920154
Description: ENCODES a protein that exhibits ADP phosphatase activity (inferred); glycerol-3-phosphatase activity (inferred); hydrolase activity (inferred); INVOLVED IN glycerol biosynthetic process (inferred); glycerophospholipid metabolic process (inferred); negative regulation of gluconeogenesis (inferred); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); endometrial carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycerol-3-phosphate phosphatase; LOC119881520
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0639,064,885 - 39,067,721 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,064,879 - 39,066,030 (+)EnsemblROS_Cfam_1.0 Ensembl


References

Genomics

Comparative Map Data
PGP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0639,064,885 - 39,067,721 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,064,879 - 39,066,030 (+)EnsemblROS_Cfam_1.0 Ensembl
PGP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,211,593 - 2,214,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,211,593 - 2,214,840 (-)EnsemblGRCh38hg38GRCh38
GRCh37162,261,594 - 2,264,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,201,604 - 2,204,823 (-)NCBINCBI36Build 36hg18NCBI36
Celera162,476,021 - 2,479,244 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,187,781 - 2,191,004 (-)NCBIHuRef
CHM1_1162,261,530 - 2,264,753 (-)NCBICHM1_1
T2T-CHM13v2.0162,234,051 - 2,237,302 (-)NCBIT2T-CHM13v2.0
Pgp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,689,400 - 24,692,084 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,689,366 - 24,692,084 (+)EnsemblGRCm39 Ensembl
GRCm381724,470,426 - 24,473,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,470,392 - 24,473,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,607,418 - 24,608,547 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,198,073 - 24,199,202 (+)NCBIMGSCv36mm8
Celera1724,986,247 - 24,987,376 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.39NCBI
Pgp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,999,782 - 14,002,408 (+)NCBIGRCr8
mRatBN7.21013,495,232 - 13,497,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,494,291 - 13,497,858 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,241,800 - 18,244,426 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,730,645 - 17,733,271 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,229,830 - 13,232,456 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,836,105 - 13,838,731 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,836,128 - 13,838,765 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,653,091 - 13,655,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,722,365 - 13,724,991 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,722,431 - 13,724,292 (+)NCBI
Celera1013,175,712 - 13,178,338 (+)NCBICelera
Cytogenetic Map10q12NCBI
Pgp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,051,183 - 15,052,289 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,051,149 - 15,053,123 (+)NCBIChiLan1.0ChiLan1.0
PGP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,716,580 - 2,717,740 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,495,802 - 6,498,639 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,070,291 - 1,073,123 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,313,409 - 2,315,698 (-)NCBIpanpan1.1PanPan1.1panPan2
Pgp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,873,104 - 104,875,444 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366941,834,016 - 1,836,359 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,762,608 - 39,778,011 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,776,815 - 39,779,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,401,344 - 42,404,185 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PGP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,107,850 - 2,110,657 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,106,451 - 2,110,657 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,951,132 - 28,952,300 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pgp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462491345,499 - 49,060 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462491345,439 - 48,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038669536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00845008271   ⟹   ENSCAFP00845006505
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl639,064,879 - 39,066,030 (+)Ensembl
RefSeq Acc Id: XM_038669536   ⟹   XP_038525464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0639,064,885 - 39,067,721 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038525464 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000028677.5
  ENSCAFP00030001089.1
  ENSCAFP00040000058.1
  ENSCAFP00845006505
  ENSCAFP00845006505.1
RefSeq Acc Id: XP_038525464   ⟸   XM_038669536
- UniProtKB: A0A8C0LW98 (UniProtKB/TrEMBL),   A0A8C0LKB7 (UniProtKB/TrEMBL),   A0A8I3N986 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845006505   ⟸   ENSCAFT00845008271


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019401 UniProtKB/TrEMBL
  ENSCAFG00030000727 UniProtKB/TrEMBL
  ENSCAFG00040000044 UniProtKB/TrEMBL
  ENSCAFG00845004622 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030843.5 UniProtKB/TrEMBL
  ENSCAFT00030001241.1 UniProtKB/TrEMBL
  ENSCAFT00040000074.1 UniProtKB/TrEMBL
  ENSCAFT00845008271 ENTREZGENE
  ENSCAFT00845008271.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
InterPro HAD-like_sf UniProtKB/TrEMBL
  HAD-SF_hydro_IIA UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  PGP_euk UniProtKB/TrEMBL
NCBI Gene LOC119881520 ENTREZGENE
PANTHER 4-NITROPHENYLPHOSPHATASE-RELATED UniProtKB/TrEMBL
  GLYCEROL-3-PHOSPHATE PHOSPHATASE UniProtKB/TrEMBL
Pfam Hydrolase_6 UniProtKB/TrEMBL
  Hydrolase_like UniProtKB/TrEMBL
PIRSF PGP-type_phosphatase UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
UniProt A0A8C0LKB7 ENTREZGENE
  A0A8C0LW98 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N986 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 PGP  phosphoglycolate phosphatase  LOC119881520  phosphoglycolate phosphatase  Symbol and/or name change 5135510 APPROVED