TAFA3 (TAFA chemokine like family member 3) - Rat Genome Database

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Gene: TAFA3 (TAFA chemokine like family member 3) Canis lupus familiaris
Analyze
Symbol: TAFA3
Name: TAFA chemokine like family member 3
RGD ID: 40907279
Description: INVOLVED IN negative regulation of microglial cell activation (ortholog); positive regulation of microglial cell activation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chemokine-like protein TAFA-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01764,023,062 - 64,027,390 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11762,757,746 - 62,762,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01762,815,770 - 62,820,074 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,575,510 - 63,579,823 (-)NCBIUU_Cfam_GSD_1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TAFA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01764,023,062 - 64,027,390 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11762,757,746 - 62,762,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01762,815,770 - 62,820,074 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,575,510 - 63,579,823 (-)NCBIUU_Cfam_GSD_1.0
TAFA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,718,905 - 112,727,235 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1112,718,905 - 112,727,235 (+)EnsemblGRCh38hg38GRCh38
GRCh371113,261,527 - 113,269,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,064,712 - 113,071,380 (+)NCBINCBI36Build 36hg18NCBI36
Build 341112,975,230 - 112,981,896NCBI
Celera1111,493,881 - 111,500,551 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1111,121,580 - 111,128,252 (+)NCBIHuRef
CHM1_11113,378,391 - 113,385,045 (+)NCBICHM1_1
T2T-CHM13v2.01112,731,456 - 112,739,787 (+)NCBIT2T-CHM13v2.0
Tafa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,674,721 - 104,686,854 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,674,722 - 104,689,156 (-)EnsemblGRCm39 Ensembl
GRCm383104,767,405 - 104,779,542 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,767,406 - 104,781,840 (-)EnsemblGRCm38mm10GRCm38
MGSCv373104,570,324 - 104,580,465 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,895,462 - 104,905,603 (-)NCBIMGSCv36mm8
Celera3106,961,764 - 106,972,902 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.84NCBI
Tafa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82194,952,499 - 194,968,776 (-)NCBIGRCr8
mRatBN7.22192,264,153 - 192,280,356 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2192,267,093 - 192,274,019 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02207,249,000 - 207,258,962 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2207,252,196 - 207,255,824 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,668,631 - 226,678,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42200,027,578 - 200,031,625 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2184,731,037 - 184,740,999 (-)NCBICelera
Cytogenetic Map2q34NCBI
Tafa3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,132,345 - 16,142,291 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,132,345 - 16,142,291 (+)NCBIChiLan1.0ChiLan1.0
TAFA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,305,846 - 114,317,473 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,453,986 - 113,465,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01115,371,555 - 115,378,880 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11124,973,677 - 124,980,938 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,973,677 - 124,980,938 (-)Ensemblpanpan1.1panPan2
Tafa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,196,369 - 16,204,452 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366901,274,868 - 1,284,991 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366901,273,255 - 1,281,362 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAFA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,707,620 - 107,719,317 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,692,354 - 107,719,394 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,763,074 - 117,792,104 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAFA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,912,338 - 20,920,525 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2020,915,648 - 20,917,564 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603823,729,077 - 23,737,755 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tafa3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247728,502,094 - 8,505,469 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247728,495,509 - 8,505,585 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038499881   ⟹   XP_038355809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11762,757,746 - 62,762,057 (-)NCBI
RefSeq Acc Id: XM_038562422   ⟹   XP_038418350
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01763,575,510 - 63,579,823 (-)NCBI
RefSeq Acc Id: XM_038626516   ⟹   XP_038482444
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01762,815,770 - 62,820,074 (-)NCBI
RefSeq Acc Id: XM_038690596   ⟹   XP_038546524
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01764,023,062 - 64,027,390 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038355809 (Get FASTA)   NCBI Sequence Viewer  
  XP_038418350 (Get FASTA)   NCBI Sequence Viewer  
  XP_038482444 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546524 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_038355809   ⟸   XM_038499881
RefSeq Acc Id: XP_038482444   ⟸   XM_038626516
RefSeq Acc Id: XP_038546524   ⟸   XM_038690596
RefSeq Acc Id: XP_038418350   ⟸   XM_038562422


Additional Information

Database Acc Id Source(s)
NCBI Gene TAFA3 ENTREZGENE