LOC119746555 (uncharacterized LOC119746555) - Rat Genome Database

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Gene: LOC119746555 (uncharacterized LOC119746555) Homo sapiens
Analyze
Symbol: LOC119746555
Name: uncharacterized LOC119746555
RGD ID: 40903007
Description:
Type: ncrna
RefSeq Status: VALIDATED
Previously known as: AL035071.1; novel transcript
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,856,632 - 32,858,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,856,621 - 32,858,751 (+)NCBIGRCh38hg38GRCh38
GRCh372031,444,438 - 31,446,557 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20q11.21NCBI
T2T-CHM13v2.02034,583,312 - 34,585,431 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC119746555
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 20q11.21(chr20:31254983-33473080)x3 copy number gain See cases [RCV000135358] Chr20:31254983..33473080 [GRCh38]
Chr20:29842786..32060886 [GRCh37]
Chr20:29306447..31524547 [NCBI36]
Chr20:20q11.21		 pathogenic
GRCh38/hg38 20q11.21-11.23(chr20:32062768-35906606)x3 copy number gain See cases [RCV000141833] Chr20:32062768..35906606 [GRCh38]
Chr20:30650571..34494528 [GRCh37]
Chr20:30114232..33957942 [NCBI36]
Chr20:20q11.21-11.23		 pathogenic
GRCh38/hg38 20p12.2-q12(chr20:9811433-39316956)x3 copy number gain See cases [RCV000052999] Chr20:9811433..39316956 [GRCh38]
Chr20:9792081..37945599 [GRCh37]
Chr20:9740081..37379013 [NCBI36]
Chr20:20p12.2-q12		 pathogenic
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33		 pathogenic

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_171378
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,856,632 - 32,858,751 (+)NCBI
T2T-CHM13v2.02034,583,312 - 34,585,431 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC LOC119746555 COSMIC
Ensembl Genes ENSG00000260257 ENTREZGENE
Ensembl Transcript ENST00000569087 ENTREZGENE
GTEx ENSG00000260257 GTEx
Human Proteome Map LOC119746555 Human Proteome Map
NCBI Gene LOC119746555 ENTREZGENE
RNAcentral URS00021EDA48 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-07 LOC119746555  uncharacterized LOC119746555  AL035071.1  novel transcript  Data merged from RGD:16562655 737654 PROVISIONAL