AA413626 (expressed sequence AA413626) - Rat Genome Database

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Gene: AA413626 (expressed sequence AA413626) Mus musculus
Analyze
Symbol: AA413626
Name: expressed sequence AA413626
RGD ID: 4035980
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: Rpl17  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,868,516 - 4,868,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,868,510 - 4,869,003 (+)EnsemblGRCm39 Ensembl
GRCm38114,918,516 - 4,918,918 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,918,510 - 4,919,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv37114,818,513 - 4,819,006 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera115,416,018 - 5,416,511 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in AA413626
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:120
Interacting mature miRNAs:125
Transcripts:ENSMUST00000121125
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000121125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,868,510 - 4,869,003 (+)Ensembl
GRCm38.p6 Ensembl114,918,510 - 4,919,003 (+)Ensembl
RefSeq Acc Id: NR_102683
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,868,516 - 4,868,918 (+)NCBI
GRCm38114,918,516 - 4,918,918 (+)NCBI
Celera115,416,024 - 5,416,426 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084381 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000121125 ENTREZGENE
MGD MGI:3035311 ENTREZGENE
NCBI Gene 100359413 ENTREZGENE
PhenoGen AA413626 PhenoGen