LOC134480950 (igE-binding protein-like) - Rat Genome Database

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Gene: LOC134480950 (igE-binding protein-like) Rattus norvegicus
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Symbol: LOC134480950
Name: igE-binding protein-like
RGD ID: 402100396
Description: Predicted to enable nucleic acid binding activity and structural molecule activity. Predicted to be involved in DNA integration. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC134480950
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81125,680,238 - 25,686,423 (-)NCBIGRCr8
mRatBN7.2 Ensembl1112,193,771 - 12,199,421 (-)EnsemblmRatBN7.2 Ensembl
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000100005   ⟹   ENSRNOP00000094462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1112,193,771 - 12,199,421 (-)Ensembl
RefSeq Acc Id: XM_063270837   ⟹   XP_063126907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,680,238 - 25,686,423 (-)NCBI
RefSeq Acc Id: XM_063270838   ⟹   XP_063126908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,680,238 - 25,686,423 (-)NCBI
RefSeq Acc Id: XM_063270839   ⟹   XP_063126909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,680,238 - 25,686,423 (-)NCBI
RefSeq Acc Id: XM_063270840   ⟹   XP_063126910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,680,238 - 25,686,423 (-)NCBI
RefSeq Acc Id: XR_010056000
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,680,238 - 25,686,423 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063126907 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126908 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126909 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126910 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000090786.1
  ENSRNOP00000094462.1
RefSeq Acc Id: XP_063126908   ⟸   XM_063270838
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALP2 (UniProtKB/TrEMBL),   A0A8I6AEH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126907   ⟸   XM_063270837
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALP2 (UniProtKB/TrEMBL),   A0A8I6AEH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126910   ⟸   XM_063270840
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126909   ⟸   XM_063270839
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALP2 (UniProtKB/TrEMBL),   A0A8I6AEH0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094462   ⟸   ENSRNOT00000100005
Protein Domains
Integrase catalytic   Integrase-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000069240 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000069423 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000100005.1 UniProtKB/TrEMBL
  ENSRNOT00000105553.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.200 UniProtKB/TrEMBL
  Ribonuclease H-like superfamily/Ribonuclease H UniProtKB/TrEMBL
InterPro GP41-like UniProtKB/TrEMBL
  Integrase-like_N UniProtKB/TrEMBL
  Integrase_cat-core UniProtKB/TrEMBL
  Integrase_Zn-bd_dom_N UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
  Viral_Envelope_Glycoprotein UniProtKB/TrEMBL
NCBI Gene LOC134480950 ENTREZGENE
PANTHER ENDOGENOUS RETROVIRUS GROUP K MEMBER POL PROTEIN UniProtKB/TrEMBL
  RIKEN CDNA 1500011B03 GENE UniProtKB/TrEMBL
  RIKEN CDNA 1500011B03 GENE-RELATED UniProtKB/TrEMBL
  RNA-DIRECTED DNA POLYMERASE-RELATED UniProtKB/TrEMBL
Pfam GP41 UniProtKB/TrEMBL
  Integrase_Zn UniProtKB/TrEMBL
  rve UniProtKB/TrEMBL
PhenoGen LOC134480950 PhenoGen
PROSITE INTEGRASE UniProtKB/TrEMBL
  ZF_INTEGRASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000069240 RatGTEx
  ENSRNOG00000069423 RatGTEx
Superfamily-SCOP N-terminal Zn binding domain of HIV integrase UniProtKB/TrEMBL
  Ribonuclease H-like UniProtKB/TrEMBL
UniProt A0A8I6AEH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALP2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-05 LOC134480950  igE-binding protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL