Apob-icr (Apob intestinal control region) - Rat Genome Database

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Gene: Apob-icr (Apob intestinal control region) Mus musculus
Analyze
Symbol: Apob-icr
Name: Apob intestinal control region
RGD ID: 39129848
Description: This region contains an enhancer that likely regulates expression of the apolipoprotein B (Apob) gene, located approximately 60 kb downstream. The corresponding region in human contains an enhancer for expression in the intestine, as well as an insulator and putative scaffold/matrix attachment region (S/MAR). [provided by RefSeq, Oct 2015]
Type: biological-region
RefSeq Status: REVIEWED
Previously known as: Rr366635
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39127,969,721 - 7,970,412 (+)NCBIGRCm39GRCm39mm39
GRCm38127,919,721 - 7,920,412 (+)NCBIGRCm38GRCm38mm10GRCm38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10859308   PMID:15904874  


Genomics

Comparative Map Data
Apob-icr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39127,969,721 - 7,970,412 (+)NCBIGRCm39GRCm39mm39
GRCm38127,919,721 - 7,920,412 (+)NCBIGRCm38GRCm38mm10GRCm38
APOB-ICR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38221,094,585 - 21,101,784 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37221,317,457 - 21,324,656 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.0221,127,781 - 21,134,980 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Apob-icr
18 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse


Expression


Sequence



Additional Information

Database Acc Id Source(s)
NCBI Gene Apob-icr ENTREZGENE
PhenoGen Apob-icr PhenoGen