Gm57555 (predicted gene, 57555) - Rat Genome Database

Name: Gm57555
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm57555 (predicted gene, 57555) Mus musculus

Analyze

Symbol:

Gm57555

Name:

predicted gene, 57555

RGD ID:

39128939

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Previously known as:

LOC115487390; uncharacterized LOC115487390

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	50,373,261 - 50,398,198 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	10	50,497,165 - 50,522,102 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Cytogenetic Map	10	B3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm57555
741 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302092	Ath11_m	atherosclerosis 11 (mouse)			Not determined		10	6151945	58693521	Mouse
1357740	Obsty3_m	obesity 3 (mouse)			Not determined		10	8235478	116190980	Mouse
1301386	Sysbp1_m	systolic blood pressure 1 (mouse)			Not determined		10	10108265	87401095	Mouse
1357825	Kidpq2_m	kidney weight percentage QTL 2 (mouse)			Not determined		10	12704051	84079784	Mouse
1357656	Hrtq3_m	heart weight QTL 3 (mouse)			Not determined		10	12704051	84079784	Mouse
1357864	Scfpq1_m	subcutaneous fat pad percentage QTL 1 (mouse)			Not determined		10	12704051	84079784	Mouse
39128215	Lwq17_m	liver weight QTL 17 (mouse)					10	12704051	84079784	Mouse
4141956	Egq7_m	early growth QTL 7 (mouse)			Not determined			12704051	84079784	Mouse
4141943	W6q6_m	weight 6 weeks QTL 6 (mouse)			Not determined			12704051	84079784	Mouse
4142272	W10q5_m	weight 10 weeks QTL 5 (mouse)			Not determined			12704051	84079784	Mouse
4142380	W3q11_m	weight 3 weeks QTL 11 (mouse)			Not determined			12704051	84079784	Mouse
1302067	Scc9_m	colon tumor susceptibility 9 (mouse)			Not determined		10	18259333	125575232	Mouse
27226772	Tibl13_m	tibia length 13, 10 week (mouse)					10	18875748	129635869	Mouse
10755518	Chol16_m	cholesterol 16 (mouse)					10	18915043	52915043	Mouse
1302160	Mbis2_m	Mycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)			Not determined		10	20283185	56031223	Mouse
1558757	Eae34_m	experimental allergic encephalomyelitis susceptibility 34 (mouse)			Not determined		10	21408154	114217230	Mouse
1301003	Lmblgq4_m	limb length QTL 4 (mouse)			Not determined		10	21591192	68091639	Mouse
26884394	Humsd3_m	humerus midshaft diameter 3, 10 week (mouse)					10	22375899	51076096	Mouse
26884403	Cvht8_m	cranial vault height 8, 16 week (mouse)					10	22875899	91035862	Mouse
26884426	Cvht1_m	cranial vault height 1, 5 week (mouse)					10	24675898	121035905	Mouse
1300898	Cfid_m	cystic fibrosis intestinal distress (mouse)			Not determined		10	29720403	63720483	Mouse
10045632	Heal16_m	wound healing/regeneration 16 (mouse)			Not determined		10	30974499	64974630	Mouse
1357558	Bmch4_m	bone mechanical trait 4 (mouse)			Not determined		10	31577136	65577284	Mouse
27095920	Pglq9_m	pelvic girdle length QTL 9, 10 week (mouse)					10	33775996	70835830	Mouse
27095911	Pglq15_m	pelvic girdle length QTL 15, 16 week (mouse)					10	39175996	129635869	Mouse
27226764	Tibl19_m	tibia length 19, 16 week (mouse)					10	39175996	129635869	Mouse
21079434	Bdym5_m	body mass QTL 5 (mouse)					10	40545996	54836096	Mouse
4141070	Ltgq1_m	liver triglyceride QTL 1 (mouse)			Not determined			41237326	75237326	Mouse
26884411	Bzwq8_m	bi-zygomatic width QTL 8, 10 week (mouse)					10	44876096	115935905	Mouse
26884407	Bzwq14_m	bi-zygomatic width QTL 14, 16 wee (mouse)					10	45476096	120635905	Mouse
26884421	Cvht5_m	cranial vault height 5, 10 week (mouse)					10	45576096	69135830	Mouse
14697707	Stsl2_m	Salmonella typhimurium susceptibility locus 2 (mouse)					10	46276096	53876096	Mouse
26884400	Huml5_m	humerus length 5, 16 week (mouse)					10	46276096	69235830	Mouse
4142313	Angvq1_m	angiogenesis by VEGF QTL 1 (mouse)			Not determined			46720403	82491121	Mouse
4141159	Phl2_m	progressive hearing loss 2 (mouse)			Not determined		10	47974499	70112651	Mouse
1302150	Bbaa18_m	B.burgdorferi-associated arthritis 18 (mouse)			Not determined		10	49338012	83338157	Mouse
10045641	Jckm3_m	juvenile cystic kidney modifier 3 (mouse)			Not determined		10	49848187	83848412	Mouse
1300597	Skull14_m	skull morphology 14 (mouse)			Not determined		10	49848187	83848412	Mouse
4142169	Pbwg16_m	postnatal body weight growth 16 (mouse)			Not determined		10	49848187	83848412	Mouse
1357737	Hpcr2_m	hepatocarcinogen resistance 2 (mouse)			Not determined		10	49848222	83848397	Mouse
1301966	Lifespan2_m	life span 2 (mouse)			Not determined		10	49848222	83848397	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_003948868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003948869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC153954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_003948868

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	50,373,261 - 50,398,198 (-)	NCBI

Sequence:

show sequence

ATGTACAATTTTCCACCCACACAGAACTGCTTGAACAAGATGACAACTCTCATTCGTAGAGTCT
GCTCCCAGCTTGTCCACAAGGCTCACTTCATGAACAGCACCTGGGGGGAGACAGAATGCAGTGA
CACCTCTGATGAAAGCTGTACCAGTGTCTTCAGAGGACTCATGACTGGAAATCTACTCCCTCCA
GTCATGCATGGATGTGTCCAAAGCTGGCTTTAACAATTCAAACAGCAAGGTGTCCTGGCAGGAT
GTTTTATCTCATCATGCCTCTGTGGAGGAAGCCCAATGGAAGGGCACCAACATAACCAGTGAAA
AGATAAAATTATCTCTTCCACAAACCTCACTCACCTCAGGAGAACCTCATGAAACAGCTCTGTG
ACCTGACTAGTGCTGGTTCAAAGGACAACATGACCCCAGGATAGTTCACCTCCATTTTCCAGCA
AGGAGGGCCATCATGAGAGTCCTGCTATACAAGAAAGAGAATTCAGCCCATTCTCTTCAGAGAG
TTTCCTTTAAAATGTGAATCTGGAAGACCCTGAAGAATGGTGTCATAAAAGGTCTGGGAACTTT
ATGTTGCTGTCTGCTAATCCAAAAGAGACCGTGCCTAGCGAGCAACAAAATTCTGGTTGTGAGT
TAAAAAGGCTGTGGAGGCAGCTGTGGTGTGGGGAATTGCAGGCTGGTCTCCAGTCAAACTGAGG
TCTGAACCCCGATGATCATAATCCACCTTTATGACACGGAACTGTGATCCCTGGATGGTAATAC
CAGAGAGTGGAGAGAAGCTTGCTGAGGATGCAGACAGGAGTAGGAGAGAGTCAGATCTTTTGCC
TGCATGTATGTCTGTGTGCCATGTTCATGCAGTATCCCTGAAGGCCAGAAGAGGGGCAATCAGA
GCCTCTAGAACTGGAGGTATAGACAGAAATAAGCTGTCATGTATGTGCTGGGAATGAAACATGA
GATCTCTGCAAGAGGAGTGATCTGTGGGATTCCAGCTCTATAAGTAGTCTTCACAGTTGTGCAT
TGAAATGTTTGCTGTCTAGAAAAAGTACCCAAGGAGTTAAAGGGATCTGCAACCCTATAGG

hide sequence

RefSeq Acc Id:

XR_003948869

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	50,373,261 - 50,396,851 (-)	NCBI

Sequence:

show sequence

AGTCTCTGCTCCATCAAGATCCACTGTGCACTGTGGAACTGTGATCCCTGGATGGTAATACCAG
AGAGTGGAGAGAAGCTTGCTGAGGATGCAGACAGGAGTAGGAGAGAGTCAGATCTTTTGCCTGC
ATGTATGTCTGTGTGCCATGTTCATGCAGTATCCCTGAAGGCCAGAAGAGGGGCAATCAGAGCC
TCTAGAACTGGAGGTATAGACAGAAATAAGCTGTCATGTATGTGCTGGGAATGAAACATGAGAT
CTCTGCAAGAGGAGTGATCTGTGGGATTCCAGCTCTATAAGTAGTCTTCACAGTTGTGCATTGA
AATGTTTGCTGTCTAGAAAAAGTACCCAAGGAGTTAAAGGGATCTGCAACCCTATAGG

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:7512065	ENTREZGENE
NCBI Gene	LOC115487390	ENTREZGENE
PhenoGen	Gm57555	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-08-22	Gm57555	predicted gene, 57555	LOC115487390	uncharacterized LOC115487390	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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