OR2W1-AS1 (OR2W1 antisense RNA 1) - Rat Genome Database

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Gene: OR2W1-AS1 (OR2W1 antisense RNA 1) Homo sapiens
Analyze
Symbol: OR2W1-AS1
Name: OR2W1 antisense RNA 1
RGD ID: 38668457
HGNC Page HGNC:50896
Description: ASSOCIATED WITH genetic disease; INTERACTS WITH bisphenol F; fulvestrant
Type: ncrna
RefSeq Status: VALIDATED
Previously known as: LOC100129636; uncharacterized LOC100129636
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,036,021 - 29,076,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37629,003,798 - 29,044,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p22.1NCBI
HuRef628,811,403 - 28,851,918 (+)NCBIHuRef
CHM1_1629,006,293 - 29,046,810 (+)NCBICHM1_1
T2T-CHM13v2.0628,910,725 - 28,951,429 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol F  (EXP)
fulvestrant  (EXP)

References
Additional References at PubMed
PMID:16751776  


Genomics

Variants

.
Variants in OR2W1-AS1
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_030903.3(OR2W1):c.41T>C (p.Leu14Pro) single nucleotide variant Inborn genetic diseases [RCV003251034] Chr6:29045135 [GRCh38]
Chr6:29012912 [GRCh37]
Chr6:6p22.1		 uncertain significance
GRCh38/hg38 6p22.1(chr6:28763187-29769828)x3 copy number gain See cases [RCV000141858] Chr6:28763187..29769828 [GRCh38]
Chr6:28730964..29737605 [GRCh37]
Chr6:28838943..29845584 [NCBI36]
Chr6:6p22.1		 uncertain significance
GRCh38/hg38 6p22.1(chr6:28954915-29358240)x1 copy number loss See cases [RCV000138326] Chr6:28954915..29358240 [GRCh38]
Chr6:28922692..29326017 [GRCh37]
Chr6:29030671..29433996 [NCBI36]
Chr6:6p22.1		 likely benign
GRCh38/hg38 6p22.1(chr6:28954920-29358310)x3 copy number gain See cases [RCV000139079] Chr6:28954920..29358310 [GRCh38]
Chr6:28922697..29326087 [GRCh37]
Chr6:29030676..29434066 [NCBI36]
Chr6:6p22.1		 likely benign
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33		 pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
NM_030903.3(OR2W1):c.61C>A (p.Pro21Thr) single nucleotide variant Inborn genetic diseases [RCV002978721] Chr6:29045115 [GRCh38]
Chr6:29012892 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030903.3(OR2W1):c.475T>G (p.Leu159Val) single nucleotide variant Inborn genetic diseases [RCV002802603] Chr6:29044701 [GRCh38]
Chr6:29012478 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030903.3(OR2W1):c.217T>C (p.Phe73Leu) single nucleotide variant Inborn genetic diseases [RCV002898511] Chr6:29044959 [GRCh38]
Chr6:29012736 [GRCh37]
Chr6:6p22.1		 uncertain significance

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_125387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL662791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX248413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX927167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR388407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR547123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR933783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB450336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB457283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB507015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB522730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ589527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: NR_125387
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38629,036,021 - 29,076,740 (+)NCBI
T2T-CHM13v2.0628,910,725 - 28,951,429 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC OR2W1-AS1 COSMIC
GTEx OR2W1-AS1 GTEx
HGNC ID HGNC:50896 ENTREZGENE
Human Proteome Map OR2W1-AS1 Human Proteome Map
NCBI Gene LOC100129636 ENTREZGENE
RNAcentral URS00007E3B58 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-01-10 OR2W1-AS1  OR2W1 antisense RNA 1  LOC100129636  uncharacterized LOC100129636  Symbol and/or name change 19259463 PROVISIONAL