Gene: Pou5f1-rs4 (POU domain, class 5, transcription factor 1, related sequence 4) Mus musculus |
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Analyze |
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Symbol: |
Pou5f1-rs4 |
Name: |
POU domain, class 5, transcription factor 1, related sequence 4 |
RGD ID: |
3850582 |
MGI Page |
MGI |
Description: |
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Type: |
pseudo (Ensembl: processed_pseudogene)
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RefSeq Status: |
VALIDATED |
Previously known as: |
EG435755; Gm5712; Oct4P1; Otf3; Otf3-; Otf3-rs4; Otf3d; predicted gene 5712 |
Related Functional Gene: |
Pou5f1
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Latest Assembly: |
GRCm39 - Mouse Genome Assembly GRCm39 |
Position: |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 3 | 129,227,322 - 129,228,361 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 129,227,322 - 129,228,364 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 3 | 129,433,673 - 129,434,712 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 129,433,673 - 129,434,715 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 3 | 129,136,591 - 129,137,630 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 129,425,695 - 129,426,737 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 135,943,364 - 135,944,403 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | G3 | NCBI | | | | | cM Map | 3 | 58.05 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
QTLs in Region (GRCm39)
26884436 | Zlq3_m | zygomatic length QTL 3, 10 week (mouse) | | | | | 3 | 3265060 | 142405761 | Mouse | 13207570 | Tcq12_m | total cholesterol QTL 12 (mouse) | | | | | 3 | 16504164 | 130163649 | Mouse | 1302056 | Orgwq4_m | organ weight QTL 4 (mouse) | | | Not determined | | 3 | 30067588 | 147304689 | Mouse | 1301705 | Sles3_m | systemic lupus erythmatosus suppressor 3 (mouse) | | | Not determined | | 3 | 37174862 | 143353183 | Mouse | 26884382 | Bzwq1_m | bi-zygomatic width QTL 1, 5 week (mouse) | | | | | 3 | 52207421 | 137205761 | Mouse | 4142178 | Ctrq2_m | C. trachomatis resistance QTL 2 (mouse) | | | Not determined | | 3 | 89139967 | 137453008 | Mouse | 27226732 | Tibmd3_m | tibia midshaft diameter 3, 10 week (mouse) | | | | | 3 | 96607316 | 147805636 | Mouse | 10043955 | Wt10q4_m | body weight, 10 weeks, QTL 4 (mouse) | | | Not determined | | 3 | 98624041 | 132624197 | Mouse | 11533920 | Mvb3_m | modifier of vibrator 3 (mouse) | | | | | 3 | 98635284 | 132635383 | Mouse | 12792984 | Modn1_m | modifier of Dstn neovascularization 1 (mouse) | | | | | 3 | 98635284 | 132635383 | Mouse | 1302114 | Tbs1_m | tuberculosis severity 1 (mouse) | | | Not determined | | 3 | 98924105 | 132924250 | Mouse | 1300752 | Ap6q_m | alcohol preference 6 QTL (mouse) | | | Not determined | | 3 | 100372912 | 147045722 | Mouse | 26884419 | Bzwq6_m | bi-zygomatic width QTL 6, 10 week (mouse) | | | | | 3 | 100607316 | 137205761 | Mouse | 27226733 | Tibmd6_m | tibia midshaft diameter 6, 16 week (mouse) | | | | | 3 | 101307316 | 149805637 | Mouse | 1301805 | Mors2_m | modifier of obesity related sterility 2 (mouse) | | | Not determined | | 3 | 103482659 | 137482783 | Mouse | 1302093 | Orgwq5_m | organ weight QTL 5 (mouse) | | | Not determined | | 3 | 107376936 | 147304689 | Mouse | 1300619 | Cdcs1_m | cytokine deficiency colitis susceptibility 1 (mouse) | | | Not determined | | 3 | 109834882 | 143835005 | Mouse | 12910793 | Pwbwq7_m | post-weaning body weight QTL 7 (mouse) | | | | | 3 | 110084357 | 135715812 | Mouse | 12910796 | Pwbwq6_m | post-weaning body weight QTL 6 (mouse) | | | | | 3 | 110084357 | 135715812 | Mouse | 12910815 | Ogrq1_m | overall growth rate QTL 1 (mouse) | | | | | 3 | 110084357 | 135715812 | Mouse | 1301381 | Bomb1_m | bone marrow pre-B 1 (mouse) | | | Not determined | | 3 | 111133243 | 145133417 | Mouse | 1301100 | Bdt2_m | bone density traits 2 (mouse) | | | Not determined | | 3 | 114736617 | 148736784 | Mouse | 10043919 | Afpq8_m | abdominal fat percent QTL 8 (mouse) | | | Not determined | | 3 | 119057332 | 153057456 | Mouse | 1558868 | Ses9_m | salmonella enteritidis susceptibility 9 (mouse) | | | Not determined | | 3 | 119057332 | 153057456 | Mouse | 4141935 | Tgq15_m | triglyceride QTL 15 (mouse) | | | Not determined | | | 119318586 | 153318586 | Mouse | 4142449 | Tgq14_m | triglyceride QTL 14 (mouse) | | | Not determined | | | 119318586 | 153318586 | Mouse | 1302151 | Lprm2_m | lymphoproliferation modifier 2 (mouse) | | | Not determined | | 3 | 119778857 | 153779044 | Mouse | 10412240 | Alpq6_m | alcohol preference QTL 6 (mouse) | | | Not determined | | 3 | 120772078 | 154772078 | Mouse | 26884415 | Bzwq11_m | bi-zygomatic width QTL 11, 16 week (mouse) | | | | | 3 | 124993649 | 137205761 | Mouse | 4142245 | Pstc1_m | periosteal circumference 1 (mouse) | | | Not determined | | 3 | 126270248 | 159745316 | Mouse | 1301218 | Letohc1_m | low ethanol consumption 1 (mouse) | | | Not determined | | 3 | 126352986 | 159745316 | Mouse | 1301347 | Fpli_m | fasting plasma insulin (mouse) | | | Not determined | | 3 | 126460514 | 159745316 | Mouse | |
Expression
Sequence
RefSeq Acc Id: |
ENSMUST00000199748 |
Type: |
CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 Ensembl | 3 | 129,227,322 - 129,228,364 (+) | Ensembl | GRCm38.p6 Ensembl | 3 | 129,433,673 - 129,434,715 (+) | Ensembl |
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RefSeq Acc Id: |
NR_033594 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 | 3 | 129,227,322 - 129,228,361 (+) | NCBI | GRCm38 | 3 | 129,433,673 - 129,434,712 (+) | ENTREZGENE | MGSCv37 | 3 | 129,136,591 - 129,137,630 (+) | RGD | Celera | 3 | 135,943,364 - 135,944,403 (+) | RGD | cM Map | 3 | | ENTREZGENE |
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Sequence: |
ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCACCAGGTGGGGGCGATGGGTCAGC AGGGCTGGAGCCGGGCTGGGTGGACCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCTGGGTGGG CCTGGAATAGGACCAGGCTTAGAGGTATTGGGATCTCCCCATGTCCACCGGTATATGAGTTCTG CGGAGGGATGGCATACTGTGGACCTCAGGCTGGCGTGGAGACTTTGCAGCCTGAGAGCCAGGCA AGAGCAGGTGTGGAGAGCAACTCAGAGGAAGCCTTCTCTGGGCCTTGTGCCGACCACCCCAGTG CCGTGAAGTTGGAGATGAGGGAACCACGTCCCGAGGGGTCCCAGGACATGAAAGTCCTGCAGAA GGAGCTAGAGAAGTTTGCCAAGCTGCTGAAGCAGAAGAGGATCACCTTGGGGTACACCCAGACC GACGTGGGGCTCACCCTGGGCGTTCTCTTCAGAAAGGTGTCAGCCAGACAACCATCTACTGCTT TGAGGCCCGGCAGCTCAGCCTTATGACCATGCATAAGCTGCGGCCCCTGCTGGAGAAGTGGGTA GAGGAAGCGGAAGACAATGAGAACCTTCAGGAGATATGCAAATCGGAGACCATGGTGCAGGCCT GGAAGAAAAAGAGCGCGAGCATTGAGAACCATGTGAGGCAGAGCCTGGAGAATGAGTTTCTGAA GTGCCCAGAGCCCTCCCCGCAGCAGATCACTAGCATTAGCATCACCATGCAGCTTGGGATGGAG AAGGACATGGTTCGAGGATGGTTCTGTAACCGGCGCCAGAAGGGCAAAAGATCAAGTATTGAGT ATTCCCAACGAGAAAAGTATGAGGCTTTCCGGGGATGCCTTTCGGGGCGTGGGGTGGGGCTGTA TCCTTTCCTCTGCCCCCAGGCCCCACTTTGGCACCCCAAGCTATGGGAGCCCCCACTTCACCAC ACTACTCGATACCTGTCCTGAGGGCGAGGCCTTTCCCTCTGTCCCCTGTCATTGCTCTGGGCTC TCCCATGCATTCAAAC
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2016-11-22 |
Pou5f1-rs4 |
POU domain, class 5, transcription factor 1, related sequence 4 |
Gm5712 |
predicted gene 5712 |
Symbol and/or name change |
5135510 |
APPROVED |
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