Tsc22d1 (TSC22 domain family, member 1) - Rat Genome Database

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Gene: Tsc22d1 (TSC22 domain family, member 1) Rattus norvegicus
Analyze
Symbol: Tsc22d1
Name: TSC22 domain family, member 1
RGD ID: 3850
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Orthologous to human TSC22D1 (TSC22 domain family member 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100912462; LOC498545; MGC156831; regulatory protein TSC-22; similar to transforming growth factor beta 1 induced transcript 4 isoform 1; TGFB-stimulated clone 22 homolog; Tgfb1i4; transforming growth factor beta 1 induced transcript 4; Transforming growth factor beta stimulated clone 22; transforming growth factor beta-1-induced transcript 4 protein; TS22A; TSC-22; TSC22 domain family protein 1; uncharacterized LOC100912462
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21551,750,489 - 51,850,958 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1551,749,510 - 51,850,958 (+)Ensembl
Rnor_6.01558,554,358 - 58,658,156 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1558,554,374 - 58,658,153 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01562,249,572 - 62,348,601 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41557,404,929 - 57,502,817 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11557,515,360 - 57,518,594 (+)NCBI
Celera1551,368,663 - 51,469,040 (+)NCBICelera
Cytogenetic Map15q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
(S)-amphetamine  (ISO)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (EXP)
2-methylcholine  (ISO)
2-nitrofluorene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP,ISO)
4-acetylaminofluorene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
albendazole  (ISO)
aldehydo-D-glucose  (ISO)
aldrin  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
Archazolid B  (ISO)
Aroclor 1254  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A5  (ISO)
Brodifacoum  (EXP)
bromobenzene  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calciol  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
chloroethene  (ISO)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP,ISO)
diclofenac  (ISO)
diethyl maleate  (EXP)
diethylstilbestrol  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gefitinib  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hexachlorobenzene  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (EXP,ISO)
losartan  (EXP)
methapyrilene  (EXP,ISO)
methyl methanesulfonate  (ISO)
mifepristone  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
naphthalene  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
oxazepam  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP,ISO)
pinosylvin  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
propiconazole  (ISO)
resveratrol  (ISO)
ritodrine  (ISO)
rotenone  (EXP)
SB 203580  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
streptozocin  (EXP)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trans-pinosylvin  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vincristine  (ISO)
zearalenone  (ISO)
zinc sulfate  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Cloning of rat Sertoli cell follicle-stimulating hormone primary response complementary deoxyribonucleic acid: regulation of TSC-22 gene expression. Hamil KG and Hall SH, Endocrinology 1994 Mar;134(3):1205-12.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Molecular cloning and characterization of a transcription factor for the C-type natriuretic peptide gene promoter. Ohta S, etal., Eur J Biochem. 1996 Dec 15;242(3):460-6.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:8889548   PMID:15489334   PMID:19745830   PMID:21791611   PMID:22871113   PMID:30053369  


Genomics

Comparative Map Data
Tsc22d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21551,750,489 - 51,850,958 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1551,749,510 - 51,850,958 (+)Ensembl
Rnor_6.01558,554,358 - 58,658,156 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1558,554,374 - 58,658,153 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01562,249,572 - 62,348,601 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41557,404,929 - 57,502,817 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11557,515,360 - 57,518,594 (+)NCBI
Celera1551,368,663 - 51,469,040 (+)NCBICelera
Cytogenetic Map15q11NCBI
TSC22D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381344,432,143 - 44,577,344 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1344,432,143 - 44,577,147 (-)EnsemblGRCh38hg38GRCh38
GRCh371345,006,279 - 45,150,701 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361343,905,658 - 44,048,701 (-)NCBINCBI36hg18NCBI36
Celera1326,063,743 - 26,206,780 (-)NCBI
Cytogenetic Map13q14.11NCBI
HuRef1325,807,840 - 25,952,293 (-)NCBIHuRef
CHM1_11344,973,738 - 45,118,257 (-)NCBICHM1_1
T2T-CHM13v2.01343,651,902 - 43,796,352 (-)NCBI
Tsc22d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,652,401 - 76,745,205 (+)NCBIGRCm39mm39
GRCm39 Ensembl1476,652,401 - 76,745,205 (+)Ensembl
GRCm381476,414,961 - 76,507,765 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1476,414,961 - 76,507,765 (+)EnsemblGRCm38mm10GRCm38
MGSCv371476,815,628 - 76,907,573 (+)NCBIGRCm37mm9NCBIm37
MGSCv361475,149,976 - 75,241,916 (+)NCBImm8
Celera1473,915,823 - 74,008,437 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.44NCBI
Tsc22d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555182,321,226 - 2,450,812 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555182,322,566 - 2,451,519 (-)NCBIChiLan1.0ChiLan1.0
TSC22D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13198,324,581 - 198,469,869 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3198,325,494 - 198,469,869 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01325,597,530 - 25,743,522 (-)NCBIMhudiblu_PPA_v0panPan3
TSC22D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1226,375,585 - 6,506,511 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl226,375,577 - 6,505,672 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha226,365,529 - 6,496,028 (+)NCBI
ROS_Cfam_1.0226,493,917 - 6,624,793 (+)NCBI
ROS_Cfam_1.0 Ensembl226,494,019 - 6,624,793 (+)Ensembl
UMICH_Zoey_3.1226,276,217 - 6,407,003 (+)NCBI
UNSW_CanFamBas_1.0226,338,136 - 6,468,818 (+)NCBI
UU_Cfam_GSD_1.0226,345,130 - 6,475,898 (+)NCBI
Tsc22d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945154,776,673 - 154,890,895 (-)NCBI
SpeTri2.0NW_004936791697,244 - 811,463 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSC22D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,518,795 - 22,634,407 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,518,792 - 22,634,411 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21122,821,681 - 22,853,358 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSC22D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1322,529,552 - 22,673,495 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605721,449,369 - 21,593,344 (+)NCBIVero_WHO_p1.0
Tsc22d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474810,420,659 - 10,592,135 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474810,420,584 - 10,589,366 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D15Rat18  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1551,406,647 - 51,406,792UniSTS
RH 3.4 Map15465.6RGD
RH 3.4 Map15465.6UniSTS
SHRSP x BN Map1534.6299UniSTS
SHRSP x BN Map1534.6299RGD
FHH x ACI Map1547.39RGD
Cytogenetic Map15q11UniSTS
Egr5-rs  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21551,850,447 - 51,850,638 (+)MAPPERmRatBN7.2
Rnor_6.01558,657,646 - 58,657,836NCBIRnor6.0
Rnor_5.01562,348,091 - 62,348,281UniSTSRnor5.0
RGSC_v3.41557,502,307 - 57,502,497UniSTSRGSC3.4
Celera1551,468,530 - 51,468,720UniSTS
Cytogenetic Map15q11UniSTS
RH132445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21551,850,615 - 51,850,827 (+)MAPPERmRatBN7.2
mRatBN7.23122,796,314 - 122,796,526 (+)MAPPERmRatBN7.2
Rnor_6.03128,444,710 - 128,444,921NCBIRnor6.0
Rnor_6.01558,657,814 - 58,658,025NCBIRnor6.0
Rnor_5.01562,348,259 - 62,348,470UniSTSRnor5.0
Rnor_5.03134,933,486 - 134,933,697UniSTSRnor5.0
RGSC_v3.43123,548,723 - 123,548,934UniSTSRGSC3.4
RGSC_v3.41557,502,475 - 57,502,686UniSTSRGSC3.4
Celera1551,468,698 - 51,468,909UniSTS
Celera3121,538,315 - 121,538,526UniSTS
Cytogenetic Map15q11UniSTS
RH132755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21551,776,100 - 51,776,301 (+)MAPPERmRatBN7.2
Rnor_6.01558,580,041 - 58,580,241NCBIRnor6.0
Rnor_5.01562,275,255 - 62,275,455UniSTSRnor5.0
RGSC_v3.41557,430,540 - 57,430,740UniSTSRGSC3.4
Celera1551,394,275 - 51,394,475UniSTS
RH 3.4 Map15464.31UniSTS
Cytogenetic Map15q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:948
Count of miRNA genes:239
Interacting mature miRNAs:285
Transcripts:ENSRNOT00000001360, ENSRNOT00000058206
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_360080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_360081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC059146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG372788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB771530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L25785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001360   ⟹   ENSRNOP00000001360
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,847,734 - 51,850,953 (+)Ensembl
Rnor_6.0 Ensembl1558,654,913 - 58,658,153 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000058206   ⟹   ENSRNOP00000055007
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,750,489 - 51,850,958 (+)Ensembl
Rnor_6.0 Ensembl1558,554,374 - 58,658,142 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107638   ⟹   ENSRNOP00000082152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,796,135 - 51,850,953 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109894   ⟹   ENSRNOP00000080511
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,832,613 - 51,850,953 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110180   ⟹   ENSRNOP00000091237
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,750,826 - 51,850,958 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110281   ⟹   ENSRNOP00000085587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,749,510 - 51,775,414 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119698   ⟹   ENSRNOP00000087730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,847,688 - 51,849,235 (+)Ensembl
RefSeq Acc Id: NM_001109912   ⟹   NP_001103382
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,750,489 - 51,850,958 (+)NCBI
Rnor_6.01558,554,429 - 58,658,156 (+)NCBI
Rnor_5.01562,249,572 - 62,348,601 (+)NCBI
RGSC_v3.41557,404,929 - 57,502,817 (+)RGD
Celera1551,368,663 - 51,469,040 (+)RGD
Sequence:
RefSeq Acc Id: NM_013043   ⟹   NP_037175
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,847,715 - 51,850,958 (+)NCBI
Rnor_6.01558,654,913 - 58,658,156 (+)NCBI
Rnor_5.01562,249,572 - 62,348,601 (+)NCBI
RGSC_v3.41557,404,929 - 57,502,817 (+)RGD
Celera1551,465,797 - 51,469,040 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252340   ⟹   XP_006252402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,750,731 - 51,776,517 (+)NCBI
Rnor_6.01558,554,425 - 58,589,694 (+)NCBI
Rnor_5.01562,249,572 - 62,348,601 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093592   ⟹   XP_038949520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,849,331 - 51,850,958 (+)NCBI
RefSeq Acc Id: XM_039093593   ⟹   XP_038949521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,820,924 - 51,850,958 (+)NCBI
RefSeq Acc Id: XR_005493778
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,750,731 - 51,776,517 (+)NCBI
RefSeq Acc Id: XR_005493779
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,750,731 - 51,776,517 (+)NCBI
RefSeq Acc Id: XR_005493780
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,750,731 - 51,776,517 (+)NCBI
RefSeq Acc Id: XR_360080
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,750,731 - 51,776,517 (+)NCBI
Rnor_6.01558,554,425 - 58,589,694 (+)NCBI
Rnor_5.01562,249,572 - 62,348,601 (+)NCBI
Sequence:
RefSeq Acc Id: XR_360081
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21551,750,731 - 51,776,517 (+)NCBI
Rnor_6.01558,554,425 - 58,589,694 (+)NCBI
Rnor_5.01562,249,572 - 62,348,601 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001103382   ⟸   NM_001109912
- Peptide Label: isoform 1
- UniProtKB: D3Z8M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_037175   ⟸   NM_013043
- Peptide Label: isoform 2
- UniProtKB: P62501 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006252402   ⟸   XM_006252340
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000055007   ⟸   ENSRNOT00000058206
RefSeq Acc Id: ENSRNOP00000001360   ⟸   ENSRNOT00000001360
RefSeq Acc Id: XP_038949521   ⟸   XM_039093593
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949520   ⟸   XM_039093592
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000082152   ⟸   ENSRNOT00000107638
RefSeq Acc Id: ENSRNOP00000091237   ⟸   ENSRNOT00000110180
RefSeq Acc Id: ENSRNOP00000085587   ⟸   ENSRNOT00000110281
RefSeq Acc Id: ENSRNOP00000087730   ⟸   ENSRNOT00000119698
RefSeq Acc Id: ENSRNOP00000080511   ⟸   ENSRNOT00000109894

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62501-F1-model_v2 AlphaFold P62501 1-143 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699839
Promoter ID:EPDNEW_R10362
Type:multiple initiation site
Name:Tsc22d1_1
Description:TSC22 domain family, member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01558,654,907 - 58,654,967EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 58555900 58555901 G A snv WKY/N (2020), WKY/N (MCW), GK/Ox (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (2019), WKY/Gcrc (RGD), WKY/NHsd (RGD), GK/FarMcwi (2019), SHRSP/A3NCrl (2019), WKY/NCrl (RGD)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 62251114 62251115 G A snv GK/Ox (KNAW), SHRSP/Gcrc (KNAW), WKY/NHsd (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/Gcrc (KNAW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 57406400 57406401 G A snv SHRSP/Gcrc (MDC), WKY/N (KNAW), GK/Ox (ICL), SHRSP/Gcrc (ICL), WKY/NCrl (ICL), LCR/2Mco (UMich), WKY/NHsd (ICL), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich), WKY/Gcrc (ICL)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3850 AgrOrtholog
BioCyc Gene G2FUF-13057 BioCyc
Ensembl Genes ENSRNOG00000001030 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001360 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000055007 ENTREZGENE
  ENSRNOP00000055007.2 UniProtKB/TrEMBL
  ENSRNOP00000080511.1 UniProtKB/TrEMBL
  ENSRNOP00000082152.1 UniProtKB/TrEMBL
  ENSRNOP00000085587 ENTREZGENE
  ENSRNOP00000085587.1 UniProtKB/TrEMBL
  ENSRNOP00000087730.1 UniProtKB/TrEMBL
  ENSRNOP00000091237.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001360 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000058206 ENTREZGENE
  ENSRNOT00000058206.5 UniProtKB/TrEMBL
  ENSRNOT00000107638.1 UniProtKB/TrEMBL
  ENSRNOT00000109894.1 UniProtKB/TrEMBL
  ENSRNOT00000110180.1 UniProtKB/TrEMBL
  ENSRNOT00000110281 ENTREZGENE
  ENSRNOT00000110281.1 UniProtKB/TrEMBL
  ENSRNOT00000119698.1 UniProtKB/TrEMBL
InterPro TSC-22_Dip_Bun UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498545 UniProtKB/Swiss-Prot
NCBI Gene 498545 ENTREZGENE
Pfam TSC22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tsc22d1 PhenoGen
PROSITE TSC22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC204146
UniProt A0A8I5ZPR9_RAT UniProtKB/TrEMBL
  A0A8I5ZUE9_RAT UniProtKB/TrEMBL
  A0A8I6A468_RAT UniProtKB/TrEMBL
  A0A8I6A4Q2_RAT UniProtKB/TrEMBL
  A0A8I6AF76_RAT UniProtKB/TrEMBL
  D3Z8M8 ENTREZGENE, UniProtKB/TrEMBL
  P62501 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0JPR0 UniProtKB/Swiss-Prot
  Q00992 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Tsc22d1  TSC22 domain family, member 1  LOC100912462  uncharacterized LOC100912462  Data Merged 737654 PROVISIONAL
2012-07-05 LOC100912462  uncharacterized LOC100912462      Symbol and Name status set to provisional 70820 PROVISIONAL
2007-10-11 Tsc22d1  TSC22 domain family, member 1  Tgfb1i4  transforming growth factor beta 1 induced transcript 4  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2007-10-11 Tgfb1i4  transforming growth factor beta 1 induced transcript 4  LOC498545  similar to transforming growth factor beta 1 induced transcript 4 isoform 1  Data Merged 737654 APPROVED
2006-11-20 LOC498545  similar to transforming growth factor beta 1 induced transcript 4 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Tgfb1i4  Transforming growth factor beta stimulated clone 22      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains a leucine zipper region 634428