Slc20a2 (solute carrier family 20 member 2)

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Gene: Slc20a2 (solute carrier family 20 member 2) Rattus norvegicus

Analyze

Symbol:

Slc20a2

Name:

solute carrier family 20 member 2

RGD ID:

3699

Description:

Predicted to have inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to localize to integral component of plasma membrane. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human SLC20A2 (solute carrier family 20 member 2); PARTICIPATES IN phosphate transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Ab1-188; gibbon ape leukemia virus receptor 2; Glvr2; phosphate transporter 2; Pit-2; RAM-1; Ram1; receptor for amphitropic viruses 1; receptor for amphotropic viruses 1; sodium-dependent phosphate transporter 2; solute carrier family 20 (phosphate transporter), member 2; solute carrier family 20, member 2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC20A2 (solute carrier family 20 member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc20a2 (solute carrier family 20, member 2)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Slc20a2 (solute carrier family 20 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC20A2 (solute carrier family 20 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC20A2 (solute carrier family 20 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc20a2 (solute carrier family 20 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC20A2 (solute carrier family 20 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC20A2 (solute carrier family 20 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc20a2 (solute carrier family 20 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC20A2 (solute carrier family 20 member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Slc20a2 (solute carrier family 20, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	slc20a2 (solute carrier family 20 member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	PHO89	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	NaPi-III	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	pitr-1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	pitr-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	pitr-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	pitr-4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Caenorhabditis elegans (roundworm):	pitr-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	pitr-6	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	69,460,850 - 69,551,418 (-)	NCBI
Rnor_6.0 Ensembl	16	74,317,899 - 74,408,030 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	74,318,287 - 74,408,030 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	73,949,883 - 74,042,911 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	73,948,917 - 74,174,391 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	73,949,185 - 74,174,656 (-)	NCBI
Celera	16	67,353,947 - 67,441,733 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal ganglia calcification (ISS)

basal ganglia disease (ISO)

calcinosis (ISO)

genetic disease (ISO)

Idiopathic Basal Ganglia Calcification 1 (ISO)

IMMUNODEFICIENCY 15 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

choline (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (EXP,ISO)

flavonoids (EXP)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

ketamine (EXP)

leflunomide (ISO)

lithium atom (ISO)

lithium hydride (ISO)

menadione (ISO)

methapyrilene (EXP,ISO)

ozone (ISO)

paracetamol (ISO)

phenethyl isothiocyanate (EXP)

phenylmercury acetate (ISO)

phosphonoformic acid (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

rifampicin (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium atom (ISO)

streptozocin (ISO)

succimer (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phosphate ion transmembrane transport (IBA)

phosphate ion transport (IEA)

sodium ion transport (IEA)

transmembrane transport (IEA)

Cellular Component

integral component of membrane (IEA,TAS)

integral component of plasma membrane (IBA)

Molecular Function

inorganic phosphate transmembrane transporter activity (IBA,IEA)

symporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

phosphate transport pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	MGD data from the GO Consortium
4.	Miller DG, etal., Proc Natl Acad Sci U S A 1994 Jan 4;91(1):78-82.
5.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	OMIM Disease Annotation Pipeline
7.	Prie D, etal., Horm Res Paediatr. 2011;76 Suppl 1:71-5. doi: 10.1159/000329175. Epub 2011 Jul 21.
8.	RGD automated data pipeline
9.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	RGD automated import pipeline for gene-chemical interactions
11.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12.	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:7966619	PMID:8041748	PMID:14584042	PMID:15564340	PMID:17322102	PMID:19073637	PMID:19199708	PMID:19493963	PMID:19841935	PMID:20526720	PMID:22871113

Genomics

Comparative Map Data

Slc20a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	69,460,850 - 69,551,418 (-)	NCBI
Rnor_6.0 Ensembl	16	74,317,899 - 74,408,030 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	74,318,287 - 74,408,030 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	73,949,883 - 74,042,911 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	73,948,917 - 74,174,391 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	73,949,185 - 74,174,656 (-)	NCBI
Celera	16	67,353,947 - 67,441,733 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

SLC20A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	8	42,416,475 - 42,541,926 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	8	42,416,475 - 42,542,143 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	8	42,273,993 - 42,397,097 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	42,393,150 - 42,516,225 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	8	42,393,149 - 42,516,225	NCBI
Celera	8	41,218,715 - 41,343,998 (-)	NCBI
Cytogenetic Map	8	p11.21	ENTREZGENE
HuRef	8	40,797,207 - 40,919,889 (-)	NCBI		HuRef
CHM1_1	8	42,320,887 - 42,444,252 (-)	NCBI		CHM1_1

Slc20a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	22,966,716 - 23,059,632 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	22,966,804 - 23,059,628 (+)	Ensembl
GRCm38	8	22,476,700 - 22,569,616 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	22,476,788 - 22,569,612 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	23,587,172 - 23,680,088 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	23,942,327 - 24,035,157 (+)	NCBI			mm8
Celera	8	23,971,023 - 24,060,137 (+)	NCBI		Celera
Cytogenetic Map	8	A2	NCBI
cM Map	8	11.42	NCBI

Slc20a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955536	392,525 - 495,265 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955536	392,341 - 496,616 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC20A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	8	39,107,925 - 39,190,708 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	39,109,265 - 39,162,456 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	8	41,663,200 - 41,786,314 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SLC20A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	23,165,347 - 23,268,115 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	23,200,798 - 23,267,775 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	23,669,359 - 23,772,731 (+)	NCBI
ROS_Cfam_1.0	16	24,915,578 - 25,016,775 (+)	NCBI
UMICH_Zoey_3.1	16	23,284,583 - 23,387,961 (+)	NCBI
UNSW_CanFamBas_1.0	16	23,849,676 - 23,950,861 (+)	NCBI
UU_Cfam_GSD_1.0	16	23,900,978 - 24,001,628 (+)	NCBI

Slc20a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	46,220,778 - 46,328,780 (+)	NCBI
SpeTri2.0	NW_004936785	177,134 - 285,467 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC20A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	11,435,442 - 11,550,343 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	11,435,435 - 11,549,623 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	12,830,531 - 13,018,839 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC20A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	40,413,070 - 40,535,002 (-)	NCBI
ChlSab1.1 Ensembl	8	40,412,958 - 40,469,896 (-)	Ensembl
Vero_WHO_p1.0	NW_023666052	1,238,155 - 1,366,333 (+)	NCBI

Slc20a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624780	725,992 - 833,419 (+)	NCBI

Position Markers

D16Got73

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	16	73,970,063 - 73,970,259	UniSTS	Rnor5.0
Celera	16	67,371,631 - 67,371,815	UniSTS
RH 3.4 Map	16	663.41	UniSTS
RH 3.4 Map	16	663.41	RGD
RH 2.0 Map	16	784.3	RGD
Cytogenetic Map	16	q12.5	UniSTS

RH128687

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	69,460,948 - 69,461,165 (+)	MAPPER
Rnor_6.0	16	74,318,386 - 74,318,602	NCBI	Rnor6.0
Rnor_5.0	16	73,949,977 - 73,950,193	UniSTS	Rnor5.0
RGSC_v3.4	16	73,949,011 - 73,949,227	UniSTS	RGSC3.4
Celera	16	67,354,041 - 67,354,257	UniSTS
RH 3.4 Map	16	635.1	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

RH130609

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	69,543,759 - 69,543,939 (+)	MAPPER
Rnor_6.0	16	74,400,368 - 74,400,547	NCBI	Rnor6.0
Rnor_5.0	16	74,035,249 - 74,035,428	UniSTS	Rnor5.0
Celera	16	67,434,075 - 67,434,254	UniSTS
RH 3.4 Map	16	660.9	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

RH137390

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	69,489,878 - 69,490,053 (+)	MAPPER
Rnor_6.0	16	74,345,480 - 74,345,654	NCBI	Rnor6.0
Rnor_5.0	16	73,978,747 - 73,978,921	UniSTS	Rnor5.0
Celera	16	67,380,302 - 67,380,476	UniSTS
RH 3.4 Map	16	635.0	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	1090054	86162972	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	20755556	80316424	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	39000021	84000021	Rat
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	41512710	86512710	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	41512710	86512710	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	46558188	90668790	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	57816357	90668790	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	57816357	90668790	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	57816357	90668790	Rat
631525	Pia14	Pristane induced arthritis QTL 14	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	16	59285775	89248943	Rat
1298527	Arunc2	Aerobic running capacity QTL 2	2.9		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	73219638	80115794	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	369
Count of miRNA genes:	211
Interacting mature miRNAs:	244
Transcripts:	ENSRNOT00000026418
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		43	46	39		39	5	7	74	35	35	3	5
Low	3		11	2	19	2	3	4			6	8	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY325148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L19931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000026418 ⟹ ENSRNOP00000026418

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	74,318,296 - 74,408,030 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084330 ⟹ ENSRNOP00000074540

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	74,317,899 - 74,330,911 (-)	Ensembl

RefSeq Acc Id:

NM_017223 ⟹ NP_058919

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	69,460,855 - 69,551,418 (-)	NCBI
Rnor_6.0	16	74,318,292 - 74,408,030 (-)	NCBI
Rnor_5.0	16	73,949,883 - 74,042,911 (-)	NCBI
RGSC_v3.4	16	73,948,917 - 74,174,391 (-)	RGD
Celera	16	67,353,947 - 67,441,733 (-)	RGD

Sequence:

show sequence

GCGGAGGCCGCCGCGCCGCGCCGGTCCGCTCCGCTCGGACTGTTCCGGGAGTCGGGCGGGGAGC
GCAGGCCGAGACCCAGCGGACCGGACGACCTCTCCTTCGTCACTTCCTGCCGGCCCGCGGTTTC
CGGAGGGAACGAGAAGCCAGAAAGAAAGATCACAGCTTTCCCAGACTGGGAGAAAAAATATGGA
ATGTGGTGTACCACTGACTGACCATAACCAAATGAACTGTAGTGACAGTAGTCTAAAAGCCAGC
GGTTAACAATTTCTTCAGACTTCAACACTATCCATCGCTTTCCAGAGCAGACTCGCTGTTTACA
AGAACTCTTGGCCTCCCGAAGATAGCAACCTCAAATTTTGTTTATTTAAAATATTTCTGCAAAA
GGAAAAGTACCCCAGAGCCCATTTTCCAAAATGGCCATGGATGGGTATCTGTGGATGGTCATTT
TGGGTTTCATTATTGCTTTCATCCTGGCATTTTCAGTTGGTGCCAATGATGTTGCCAACTCCTT
TGGAACCGCGGTGGGCTCTGGCGTGGTGACCCTGAGACAGGCATGCATTCTGGCTTCGATATTT
GAAACCACCGGCTCTGTGCTTTTGGGAGCGAAAGTGGGAGAGACTATCCGGAAGGGCATCATTG
ACGTGAACCTCTACAATGAGACTGTGGAAACGCTCATGGCTGGGGAAGTGAGTGCAATGGTCGG
CTCAGCGGTCTGGCAGTTGATCGCGTCCTTCCTGAGACTCCCAATCTCAGGGACACACTGCATC
GTGGGCTCTACCATTGGCTTCTCGCTCGTGGCCATCGGCCCAAAGGGAGTGCAGTGGATGGAAC
TCGTCAAGATCGTTGCCTCCTGGTTCATATCCCCACTTCTGTCTGGCTTCATGTCTGGTGTGCT
GTTCATCCTGATCAGAATGTTCATCCTAACCAAGGAGGACCCTGTTCCAAACGGTCTCCAGGCA
CTTCCTCTGTTTTATGCTGCCACTATAGCAATAAACGTCTTCTCCATCATGTACACAGGAGCAC
CAGTGCTGGGCCTGTCGCTCCCCATCTGGGCAATAGCGCTCATCTCCTTCGGCGTTGCCCTGCT
GTTCGCCTTCTTCGTGTGGCTGTTCGTGTGTCCGTGGATGAAGAGGAAAATAGCGGGCAGGTTA
GAGAAGGAGAGTGCTCTGTCCCGCGCGTCTGACGAAAGCCTCAGGAAGGTACAGGAAGCTGAGT
CCCCTGTCTTTAAGGAGCTTCCTGGTGCCAAAGCCAGTGATGACAGCGCTGTCCCCCTCACCAG
TCTGGCTGGGGAGGCTGCGGGGGCCTCAGAAGGCACGTCAGCAGGGAACCACCCCCGGGCTTCC
TACGGCCGAGCACTTTCCATGACTCACGGCTCTGCAAAGTCACCCATCTCCAATGGAACCTTTG
GCTTCGAAGGCCACATGAGGAATGACGGTCACGTTTATCATACTGTACACAAAGACTCGGGACT
CTACAAAGACTTGCTGCACAAAATCCATGTAGACAAGGGCCCCGAGGAGAAACCAGCTCAGGAA
AACAACTACAGGCTGCTCCGGAGGAACAACAGCTACACGTGCTACACGGCAGCCATCTGCGGCA
TGCCGGTGCACGCCACCTTCAGGGCCTCGGACACCTCCTCCGCCCCCGAGGATAGCGAGAAGCT
GGTGGGTGACACCGTGTCCTATTCCAAGAAGAGGCTCCGCTACGACAGCTACTCCAGCTACTGC
AACGCGGTGGCCGAGGCGGAGATCGAGGCCGAAGAGGGCGGCGTGGAAATGAGGCTGGCCTCTG
AGCTGACCGATCCTGACCAGCCTCACGAGGATCCTGCGGAAGACGAGAAGGAGGAGAAGGACTC
CGCAGAGGTCCACCTGCTCTTCCACTTCCTGCAAGTCCTCACTGCCTGCTTTGGGTCCTTTGCT
CACGGTGGCAACGATGTGAGCAATGCTATCGGTCCCCTTGTGGCCCTGTGGCTGATATATAAAC
AAGGCGGAGTTACACAAGAAGCTGCTACTCCAGTCTGGCTGCTGTTTTATGGGGGCGTTGGCAT
CTGCACAGGTCTCTGGGTTTGGGGCAGAAGAGTGATCCAGACCATGGGGAAGGATCTCACACCC
ATCACACCGTCCAGTGGCTTCACTATTGAGCTGGCCTCTGCCTTCACCGTGGTGATCGCCTCCA
ACATTGGGCTTCCCGTCAGCACCACACACTGCAAGGTGGGCTCAGTGGTAGCCGTGGGCTGGAT
CCGCTCCCGGAAGGCTGTGGACTGGCGCCTCTTCCGGAACATATTTATTGCCTGGTTCGTGACC
GTGCCGGTGGCCGGACTTTTCAGTGCTGCTATCATGGCTCTCCTCATGTATATATGTGGTTTTG
TTTCTTCCAGTCGGTAAATGGCCACAGGGATGCTCTGACACGGATATGGTCCTCACACCTCCCA
CCCCTGCTTTCTCTGACACTTGCACACCCCTTCCACACACCTTCCTGATGGTGTCATATCACCC
CTGCTTACCCAGGCCACAGTTCATCTTCCAGAATTAACCTACCTGCTGTACATAGTAGTCTACA
TCAAGCTGATGTCGTGATGACACAATGTGGTGCGGTTACTTATATGAAATATATATTGTGTACC
TAGAACAGGTAGCATTTATTTCAAACAAACTCAGAATGAACGTGGAGGGTATTGCCTAGAATGC
AATATTCTGTTAACTGTACATAATGATTTCAGTGGCAGTAAGCGTAGAGTATCAAATCCTTTTT
TAAATACACTGTATATAGCGGGATACAGTATACTTCATACAAACCCGGGCAGGCGGGTGGGCGG
GTGAGTTCCGGCCCTTGTGTGATTGCCCAGTGCTGGGACAGGTTTTCACAAGTGCTTTCTCTGA
AGAGTGTGTTCGTGAGCGGAGTCCGAGTTACTGTGTAATGTACCACGATTGCTTCTGTAAATAC
TTTCAACTGTAATTTTAATGCTAAGCTTCCCTCATACTTTTTTGATCGGAGAATTTTGGAAAGT
ACCAAAGAACGAGAGGATAACTCGCCAGTGTTACACCTTCCCACTGCTTGTCTCCCTTCCCACC
GGCCCTGACAGTGGACCTGGTTACTTCAGCCAGGCGAGCTTAGAACTCAGCCACCCACCAGCAG
CAGCCAGGAGGCTGCCACACCAGATACTGGAAAGCTTGTTCAGTGGCCTTTCACTGTCACCAGC
GCGGATGACATACAGCAGTGGGGGTGTAGAATTAAACACTACATACATATCAAGTCCAACTCCA
GGGTCCCTCCCCGTCGCACCCAGTGGCCTGAAAAGCAGGAATCTCGTTGCAGACATTAAAGCCA
GTGAGGCTCTTGATGGGCTCGGATGCTGCCAACTCAGGGCTTAGCCGGAAGTATGGGCGGGGAC
ACTGGGCTTGGGGATCTTTGAGGCCTTTTCTGTGGAGAACATCCGAGGTTCTCCTGTGGAGCCG
CTGTTCTCTTCTGATGGCGGCGGGAGAGCGTCGGTGTCACTAAAATGTTAAGAGCCTGAAACCA
TGGAAACGCTGCTAATATTTTTATATTGACATACATTTTCACGGTACTTCATTGTAATTTTTTC
ATTAATCAAGCATATTAAATTTATAATAAAAAAGTGCCCCTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_008771351 ⟹ XP_008769573

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	69,460,850 - 69,521,706 (-)	NCBI
Rnor_6.0	16	74,318,287 - 74,377,622 (-)	NCBI

Sequence:

show sequence

TAGTACTGTTCAACTGAATTCACTAATTAGCGTCATCACGATGCTGTGCTGTTCAGCAGGGCAC
ACCCCTTGGCTGGCTTCCTATTAAAGAGGACACCAGTGTTGTCCTAGTGAATAAATCCCGGCCC
ACATGATGCAAACCAGCGTGTTCCTGCCTGCTGCTCTGCTGTAGTTAATTTTAGCCAGCGTTTG
TTCTATGAGTTGTAAAACTGTTCGCCCAAGTAGAAGTTAGTAAGCTGAAATGTGACTTCTGGGC
CTGTGCGCTAGCTAGCTATTTCAGACTTCAGATTGTGTTTATGATCCGGAGAGCAGGCATCTGA
AGAATCGTGGGTCAGATTTCTTTTCAAACTACTTAAAGAAAGATCACAGCTTTCCCAGACTGGG
AGAAAAAATATGGAATGTGGTGTACCACTGACTGACCATAACCAAATGAACTGTAGTGACAGTA
GTCTAAAAGCCAGCGGTTAACAATTTCTTCAGACTTCAACACTATCCATCGCTTTCCAGAGCAG
ACTCGCTGTTTACAAGAACTCTTGGCCTCCCGAAGATAGCAACCTCAAATTTTGTTTATTTAAA
ATATTTCTGCAAAAGGAAAAGTACCCCAGAGCCCATTTTCCAAAATGGCCATGGATGGGTATCT
GTGGATGGTCATTTTGGGTTTCATTATTGCTTTCATCCTGGCATTTTCAGTTGGTGCCAATGAT
GTTGCCAACTCCTTTGGAACCGCGGTGGGCTCTGGCGTGGTGACCCTGAGACAGGCATGCATTC
TGGCTTCGATATTTGAAACCACCGGCTCTGTGCTTTTGGGAGCGAAAGTGGGAGAGACTATCCG
GAAGGGCATCATTGACGTGAACCTCTACAATGAGACTGTGGAAACGCTCATGGCTGGGGAAGTG
AGTGCAATGGTCGGCTCAGCGGTCTGGCAGTTGATCGCGTCCTTCCTGAGACTCCCAATCTCAG
GGACACACTGCATCGTGGGCTCTACCATTGGCTTCTCGCTCGTGGCCATCGGCCCAAAGGGAGT
GCAGTGGATGGAACTCGTCAAGATCGTTGCCTCCTGGTTCATATCCCCACTTCTGTCTGGCTTC
ATGTCTGGTGTGCTGTTCATCCTGATCAGAATGTTCATCCTAACCAAGGAGGACCCTGTTCCAA
ACGGTCTCCAGGCACTTCCTCTGTTTTATGCTGCCACTATAGCAATAAACGTCTTCTCCATCAT
GTACACAGGAGCACCAGTGCTGGGCCTGTCGCTCCCCATCTGGGCAATAGCGCTCATCTCCTTC
GGCGTTGCCCTGCTGTTCGCCTTCTTCGTGTGGCTGTTCGTGTGTCCGTGGATGAAGAGGAAAA
TAGCGGGCAGGTTAGAGAAGGAGAGTGCTCTGTCCCGCGCGTCTGACGAAAGCCTCAGGAAGGT
ACAGGAAGCTGAGTCCCCTGTCTTTAAGGAGCTTCCTGGTGCCAAAGCCAGTGATGACAGCGCT
GTCCCCCTCACCAGTCTGGCTGGGGAGGCTGCGGGGGCCTCAGAAGGCACGTCAGCAGGGAACC
ACCCCCGGGCTTCCTACGGCCGAGCACTTTCCATGACTCACGGCTCTGCAAAGTCACCCATCTC
CAATGGAACCTTTGGCTTCGAAGGCCACATGAGGAATGACGGTCACGTTTATCATACTGTACAC
AAAGACTCGGGACTCTACAAAGACTTGCTGCACAAAATCCATGTAGACAAGGGCCCCGAGGAGA
AACCAGCTCAGGAAAACAACTACAGGCTGCTCCGGAGGAACAACAGCTACACGTGCTACACGGC
AGCCATCTGCGGCATGCCGGTGCACGCCACCTTCAGGGCCTCGGACACCTCCTCCGCCCCCGAG
GATAGCGAGAAGCTGGTGGGTGACACCGTGTCCTATTCCAAGAAGAGGCTCCGCTACGACAGCT
ACTCCAGCTACTGCAACGCGGTGGCCGAGGCGGAGATCGAGGCCGAAGAGGGCGGCGTGGAAAT
GAGGCTGGCCTCTGAGCTGACCGATCCTGACCAGCCTCACGAGGATCCTGCGGAAGACGAGAAG
GAGGAGAAGGACTCCGCAGAGGTCCACCTGCTCTTCCACTTCCTGCAAGTCCTCACTGCCTGCT
TTGGGTCCTTTGCTCACGGTGGCAACGATGTGAGCAATGCTATCGGTCCCCTTGTGGCCCTGTG
GCTGATATATAAACAAGGCGGAGTTACACAAGAAGCTGCTACTCCAGTCTGGCTGCTGTTTTAT
GGGGGCGTTGGCATCTGCACAGGTCTCTGGGTTTGGGGCAGAAGAGTGATCCAGACCATGGGGA
AGGATCTCACACCCATCACACCGTCCAGTGGCTTCACTATTGAGCTGGCCTCTGCCTTCACCGT
GGTGATCGCCTCCAACATTGGGCTTCCCGTCAGCACCACACACTGCAAGGTGGGCTCAGTGGTA
GCCGTGGGCTGGATCCGCTCCCGGAAGGCTGTGGACTGGCGCCTCTTCCGGAACATATTTATTG
CCTGGTTCGTGACCGTGCCGGTGGCCGGACTTTTCAGTGCTGCTATCATGGCTCTCCTCATGTA
TATATGTGGTTTTGTTTCTTCCAGTCGGTAAATGGCCACAGGGATGCTCTGACACGGATATGGT
CCTCACACCTCCCACCCCTGCTTTCTCTGACACTTGCACACCCCTTCCACACACCTTCCTGATG
GTGTCATATCACCCCTGCTTACCCAGGCCACAGTTCATCTTCCAGAATTAACCTACCTGCTGTA
CATAGTAGTCTACATCAAGCTGATGTCGTGATGACACAATGTGGTGCGGTTACTTATATGAAAT
ATATATTGTGTACCTAGAACAGGTAGCATTTATTTCAAACAAACTCAGAATGAACGTGGAGGGT
ATTGCCTAGAATGCAATATTCTGTTAACTGTACATAATGATTTCAGTGGCAGTAAGCGTAGAGT
ATCAAATCCTTTTTTAAATACACTGTATATAGCGGGATACAGTATACTTCATACAAACCCGGGC
AGGCGGGTGGGCGGGTGAGTTCCGGCCCTTGTGTGATTGCCCAGTGCTGGGACAGGTTTTCACA
AGTGCTTTCTCTGAAGAGTGTGTTCGTGAGCGGAGTCCGAGTTACTGTGTAATGTACCACGATT
GCTTCTGTAAATACTTTCAACTGTAATTTTAATGCTAAGCTTCCCTCATACTTTTTTGATCGGA
GAATTTTGGAAAGTACCAAAGAACGAGAGGATAACTCGCCAGTGTTACACCTTCCCACTGCTTG
TCTCCCTTCCCACCGGCCCTGACAGTGGACCTGGTTACTTCAGCCAGGCGAGCTTAGAACTCAG
CCACCCACCAGCAGCAGCCAGGAGGCTGCCACACCAGATACTGGAAAGCTTGTTCAGTGGCCTT
TCACTGTCACCAGCGCGGATGACATACAGCAGTGGGGGTGTAGAATTAAACACTACATACATAT
CAAGTCCAACTCCAGGGTCCCTCCCCGTCGCACCCAGTGGCCTGAAAAGCAGGAATCTCGTTGC
AGACATTAAAGCCAGTGAGGCTCTTGATGGGCTCGGATGCTGCCAACTCAGGGCTTAGCCGGAA
GTATGGGCGGGGACACTGGGCTTGGGGATCTTTGAGGCCTTTTCTGTGGAGAACATCCGAGGTT
CTCCTGTGGAGCCGCTGTTCTCTTCTGATGGCGGCGGGAGAGCGTCGGTGTCACTAAAATGTTA
AGAGCCTGAAACCATGGAAACGCTGCTAATATTTTTATATTGACATACATTTTCACGGTACTTC
ATTGTAATTTTTTCATTAATCAAGCATATTAAATTTATAATAAAAAAGTGCCCCTCAAAAGTTC
A

hide sequence

RefSeq Acc Id:

XM_008771352 ⟹ XP_008769574

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	69,460,850 - 69,522,463 (-)	NCBI
Rnor_6.0	16	74,318,287 - 74,378,421 (-)	NCBI

Sequence:

show sequence

TCCCCTTCTTCTATAAGGATGTTCCCCCTCCTCATCTACCCCCATCCCCAACAGGATATTTTTA
AGCTAGGAAAACAAGTAGCTCTGAAAAGACATGTAGGATTTTAGGTATCTGCCAATACCGAGTC
TGTCATAGAGGGTTTGGGAGAAAAATGGTATAATCCAAAAATGGTGCTGTCCAACCATTGAATT
ACTTTGTAACTGTTGGAAGTGGGGGTAACTGGAGGTTTGATTAATGAAGTATCTGCTCACGGTG
AAGTTTGCCATCAGAACTGAAATGCCTAAAGCAAACCAGTCTGAATGATCCATGTTGGACGCTA
CAGTCTGTGCCTTTGTTCAACATTGTCGTTAGTGAGAGCATTTGTGTTTTTCAAACAGTGCATT
GTGCTCTAGTTTTCCTTTAAATATTGGCCGTGTTCGTGGAGTCTTGAACTGTCCACTTGGGTTT
CAATATGCTTTGAGAATGATCATGTGTTCCAATGGAGGACTTACCAATTGTAGCCAGCCATGCA
GTGAGATGCACGGTAAAATGCATTTGGTAAGTCGGAGATGTCTGTTGTCAGTTGTGGGTTTTGT
TTTCTAAGTGAACGTGTGTCCTCACGGCACCTCCTTGGGAAGTACAGAAGGAAAGCAGAAAGCT
AGTGGCTGATCTCACCAGACGTGCTGCGAAGAGCGGGCAGCACTGCCACCTTGTTGCCAGAGTT
GTCCGAAGTGAATGTGCTTGAACATCAAGTCTGTCCCCGCGGAGACTGCACTGCACGCTCTCTG
TCGGCACTTGCAGAACCGATTTAAAAAAGAAAGATCACAGCTTTCCCAGACTGGGAGAAAAAAT
ATGGAATGTGGTGTACCACTGACTGACCATAACCAAATGAACTGTAGTGACAGTAGTCTAAAAG
CCAGCGGTTAACAATTTCTTCAGACTTCAACACTATCCATCGCTTTCCAGAGCAGACTCGCTGT
TTACAAGAACTCTTGGCCTCCCGAAGATAGCAACCTCAAATTTTGTTTATTTAAAATATTTCTG
CAAAAGGAAAAGTACCCCAGAGCCCATTTTCCAAAATGGCCATGGATGGGTATCTGTGGATGGT
CATTTTGGGTTTCATTATTGCTTTCATCCTGGCATTTTCAGTTGGTGCCAATGATGTTGCCAAC
TCCTTTGGAACCGCGGTGGGCTCTGGCGTGGTGACCCTGAGACAGGCATGCATTCTGGCTTCGA
TATTTGAAACCACCGGCTCTGTGCTTTTGGGAGCGAAAGTGGGAGAGACTATCCGGAAGGGCAT
CATTGACGTGAACCTCTACAATGAGACTGTGGAAACGCTCATGGCTGGGGAAGTGAGTGCAATG
GTCGGCTCAGCGGTCTGGCAGTTGATCGCGTCCTTCCTGAGACTCCCAATCTCAGGGACACACT
GCATCGTGGGCTCTACCATTGGCTTCTCGCTCGTGGCCATCGGCCCAAAGGGAGTGCAGTGGAT
GGAACTCGTCAAGATCGTTGCCTCCTGGTTCATATCCCCACTTCTGTCTGGCTTCATGTCTGGT
GTGCTGTTCATCCTGATCAGAATGTTCATCCTAACCAAGGAGGACCCTGTTCCAAACGGTCTCC
AGGCACTTCCTCTGTTTTATGCTGCCACTATAGCAATAAACGTCTTCTCCATCATGTACACAGG
AGCACCAGTGCTGGGCCTGTCGCTCCCCATCTGGGCAATAGCGCTCATCTCCTTCGGCGTTGCC
CTGCTGTTCGCCTTCTTCGTGTGGCTGTTCGTGTGTCCGTGGATGAAGAGGAAAATAGCGGGCA
GGTTAGAGAAGGAGAGTGCTCTGTCCCGCGCGTCTGACGAAAGCCTCAGGAAGGTACAGGAAGC
TGAGTCCCCTGTCTTTAAGGAGCTTCCTGGTGCCAAAGCCAGTGATGACAGCGCTGTCCCCCTC
ACCAGTCTGGCTGGGGAGGCTGCGGGGGCCTCAGAAGGCACGTCAGCAGGGAACCACCCCCGGG
CTTCCTACGGCCGAGCACTTTCCATGACTCACGGCTCTGCAAAGTCACCCATCTCCAATGGAAC
CTTTGGCTTCGAAGGCCACATGAGGAATGACGGTCACGTTTATCATACTGTACACAAAGACTCG
GGACTCTACAAAGACTTGCTGCACAAAATCCATGTAGACAAGGGCCCCGAGGAGAAACCAGCTC
AGGAAAACAACTACAGGCTGCTCCGGAGGAACAACAGCTACACGTGCTACACGGCAGCCATCTG
CGGCATGCCGGTGCACGCCACCTTCAGGGCCTCGGACACCTCCTCCGCCCCCGAGGATAGCGAG
AAGCTGGTGGGTGACACCGTGTCCTATTCCAAGAAGAGGCTCCGCTACGACAGCTACTCCAGCT
ACTGCAACGCGGTGGCCGAGGCGGAGATCGAGGCCGAAGAGGGCGGCGTGGAAATGAGGCTGGC
CTCTGAGCTGACCGATCCTGACCAGCCTCACGAGGATCCTGCGGAAGACGAGAAGGAGGAGAAG
GACTCCGCAGAGGTCCACCTGCTCTTCCACTTCCTGCAAGTCCTCACTGCCTGCTTTGGGTCCT
TTGCTCACGGTGGCAACGATGTGAGCAATGCTATCGGTCCCCTTGTGGCCCTGTGGCTGATATA
TAAACAAGGCGGAGTTACACAAGAAGCTGCTACTCCAGTCTGGCTGCTGTTTTATGGGGGCGTT
GGCATCTGCACAGGTCTCTGGGTTTGGGGCAGAAGAGTGATCCAGACCATGGGGAAGGATCTCA
CACCCATCACACCGTCCAGTGGCTTCACTATTGAGCTGGCCTCTGCCTTCACCGTGGTGATCGC
CTCCAACATTGGGCTTCCCGTCAGCACCACACACTGCAAGGTGGGCTCAGTGGTAGCCGTGGGC
TGGATCCGCTCCCGGAAGGCTGTGGACTGGCGCCTCTTCCGGAACATATTTATTGCCTGGTTCG
TGACCGTGCCGGTGGCCGGACTTTTCAGTGCTGCTATCATGGCTCTCCTCATGTATATATGTGG
TTTTGTTTCTTCCAGTCGGTAAATGGCCACAGGGATGCTCTGACACGGATATGGTCCTCACACC
TCCCACCCCTGCTTTCTCTGACACTTGCACACCCCTTCCACACACCTTCCTGATGGTGTCATAT
CACCCCTGCTTACCCAGGCCACAGTTCATCTTCCAGAATTAACCTACCTGCTGTACATAGTAGT
CTACATCAAGCTGATGTCGTGATGACACAATGTGGTGCGGTTACTTATATGAAATATATATTGT
GTACCTAGAACAGGTAGCATTTATTTCAAACAAACTCAGAATGAACGTGGAGGGTATTGCCTAG
AATGCAATATTCTGTTAACTGTACATAATGATTTCAGTGGCAGTAAGCGTAGAGTATCAAATCC
TTTTTTAAATACACTGTATATAGCGGGATACAGTATACTTCATACAAACCCGGGCAGGCGGGTG
GGCGGGTGAGTTCCGGCCCTTGTGTGATTGCCCAGTGCTGGGACAGGTTTTCACAAGTGCTTTC
TCTGAAGAGTGTGTTCGTGAGCGGAGTCCGAGTTACTGTGTAATGTACCACGATTGCTTCTGTA
AATACTTTCAACTGTAATTTTAATGCTAAGCTTCCCTCATACTTTTTTGATCGGAGAATTTTGG
AAAGTACCAAAGAACGAGAGGATAACTCGCCAGTGTTACACCTTCCCACTGCTTGTCTCCCTTC
CCACCGGCCCTGACAGTGGACCTGGTTACTTCAGCCAGGCGAGCTTAGAACTCAGCCACCCACC
AGCAGCAGCCAGGAGGCTGCCACACCAGATACTGGAAAGCTTGTTCAGTGGCCTTTCACTGTCA
CCAGCGCGGATGACATACAGCAGTGGGGGTGTAGAATTAAACACTACATACATATCAAGTCCAA
CTCCAGGGTCCCTCCCCGTCGCACCCAGTGGCCTGAAAAGCAGGAATCTCGTTGCAGACATTAA
AGCCAGTGAGGCTCTTGATGGGCTCGGATGCTGCCAACTCAGGGCTTAGCCGGAAGTATGGGCG
GGGACACTGGGCTTGGGGATCTTTGAGGCCTTTTCTGTGGAGAACATCCGAGGTTCTCCTGTGG
AGCCGCTGTTCTCTTCTGATGGCGGCGGGAGAGCGTCGGTGTCACTAAAATGTTAAGAGCCTGA
AACCATGGAAACGCTGCTAATATTTTTATATTGACATACATTTTCACGGTACTTCATTGTAATT
TTTTCATTAATCAAGCATATTAAATTTATAATAAAAAAGTGCCCCTCAAAAGTTCA

hide sequence

RefSeq Acc Id:

XM_017600054 ⟹ XP_017455543

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	69,460,850 - 69,521,257 (-)	NCBI
Rnor_6.0	16	74,318,287 - 74,377,262 (-)	NCBI

Sequence:

show sequence

ACCCTGGGAATTTTTAAGAGTTTGCTTTGTTCTTCGTACCTTAACTCTTACTAAAGTGACTATC
ACAGTAATTGTAGATGCCTTGGGAAAACTGGTGTTGATGCTGTAACCCGGCCGTGTCAGAATGG
TGGCAGAGTGTTTTCTTCACATGTGCAGTGCCCTGAGCACCTCAATGTATTCAGCTTTTCCTGG
AGAAACTATTTGATTCTTAATTTTTATTTTTAAAATGTAGATTAGCTCTTATTTTGAGTGTAAA
AATGTTAGATTGGTGGAAATGGTTACAATGTATCTCTAAGCTTCATTTTCTGTGGTAGTAACTG
TTGGGGGAAACATGTTAAAAGTTAATACCCTCTCAAGTGGATACACTGCAGAAACAAGAGAATA
TCAAGTGTTACCTTGCTAAATGTATACGTGGAAAGCATTTCTTAAAAGGAAAAGCTTATACTCA
GAAAATAGACCTTTATTCTCCTAAAGAAAATAACTTTATAAGGAAGGTTTTAGAGGGTGATTTA
AAGGATGTTCTGGTTTGACTTTGTTATCCACCATATCTAAAGCTCTTAGATGCTTCCCAGGCTG
GTCAGTCCCAACTTCTATCTGGAAGATTTCAGTTTTCTTTAAATTAAACACAAGCCACTTTGCT
TAGTTTGAACTGTGTTTACACTTAAAGTAGAATGACTTTAGGTCAAGCAGCTTGTTTATATCAG
AGCCAGAAAGAAATTCCTTTATCAGTTAACATGTACATTACACCTGCTTTAGGAACGTTGATTT
TTAATGAAACGGCTGTGCTCCCACGTCTCTATCTATAAGCACGACAGAGACAAACCCAGGGTTA
GTATCGTGACTGCCATGTCCCTATTTTGCCAAACTGTATGTAAAGGCTTCTTTGAGGTTCTGTG
TTGCCTGATTTTAAATACAAATGACATAAGGTGTCAACAATGAGAGGAAACTTTCAGTGGTGCA
TTCAGTAGGAAAAATATGTAAGAATTGAAAATAGAACTGAATTCCTAGGCTATTTTTAGAGAGA
AACATTTTTTGAAGCTTAGCTTTCTGAGCAGATGAGAAATCTGTAAGTATAACCGAGAAGTCAC
TCATGTCATCTTTAGCAGGAGAGATTCTGTCCCAGCAGATGCTTCATGATGTGCCCGTCCTCAC
ACGAGTGCTCTAGCTCTCGCCCTTACCATTGCCCTTCCTCAGAAGCCCCGCAGGCCCCTGGGAA
CGGTTTGCAATGGTGTACTCTAGTCGTGCTAGTTTTCAAGCTAAAATTAATTTGACCATTGTAG
TTTTTAATCCTGTCCCAAAGAAAAGCTGATTAGTATTTATCCATTTTTAATGTAACAGAAAGAG
GTTTATCTGTTAGAGGGAAGCATGTGTTCTAGGGTGAATTGTTAAATGCTCATAGACACTTCCA
GAGTGTGTGTTGGTGATTTCTGTTTGGTGAGGATGATTAGGAGAGTGAAGAGGTCTTCAACGTG
GAGTTCTGAGGGCAGTATTGGCTTCCAGGTGTTGGCTGGTTCCGTGATTCTCTTCAGTACTCCT
CTGTGCCCCATGAAGGGGCACTTGTCAGAGACCCCTCATGAGTGGAAGCTCTGTTGGCTTGTTG
TGCCTTAGAATGTAACAGATCACAGGGAGCTCAGCTGTGTGGTCACAGATTCGAGGTCACATGC
TAAGAAACACAGTTCGCCTCCTAACCGCAGGAAGAGCCCAGCTTTGACCCATGTGTGTGGCTGC
CTCTCTACTCCAGATCTGGCCCTCTGGTCCTGTAGGAGCTGCTCTCACTGGCTGCCTGCCTGCC
CTCTTCCTCCTTGCTTCTTTAGATCCTGCTCTCCAAAGGCCTTTGACCTGACAGCTGCTGAGGC
AAAAGAAAGATCACAGCTTTCCCAGACTGGGAGAAAAAATATGGAATGTGGTGTACCACTGACT
GACCATAACCAAATGAACTGTAGTGACAGTAGTCTAAAAGCCAGCGGTTAACAATTTCTTCAGA
CTTCAACACTATCCATCGCTTTCCAGAGCAGACTCGCTGTTTACAAGAACTCTTGGCCTCCCGA
AGATAGCAACCTCAAATTTTGTTTATTTAAAATATTTCTGCAAAAGGAAAAGTACCCCAGAGCC
CATTTTCCAAAATGGCCATGGATGGGTATCTGTGGATGGTCATTTTGGGTTTCATTATTGCTTT
CATCCTGGCATTTTCAGTTGGTGCCAATGATGTTGCCAACTCCTTTGGAACCGCGGTGGGCTCT
GGCGTGGTGACCCTGAGACAGGCATGCATTCTGGCTTCGATATTTGAAACCACCGGCTCTGTGC
TTTTGGGAGCGAAAGTGGGAGAGACTATCCGGAAGGGCATCATTGACGTGAACCTCTACAATGA
GACTGTGGAAACGCTCATGGCTGGGGAAGTGAGTGCAATGGTCGGCTCAGCGGTCTGGCAGTTG
ATCGCGTCCTTCCTGAGACTCCCAATCTCAGGGACACACTGCATCGTGGGCTCTACCATTGGCT
TCTCGCTCGTGGCCATCGGCCCAAAGGGAGTGCAGTGGATGGAACTCGTCAAGATCGTTGCCTC
CTGGTTCATATCCCCACTTCTGTCTGGCTTCATGTCTGGTGTGCTGTTCATCCTGATCAGAATG
TTCATCCTAACCAAGGAGGACCCTGTTCCAAACGGTCTCCAGGCACTTCCTCTGTTTTATGCTG
CCACTATAGCAATAAACGTCTTCTCCATCATGTACACAGGAGCACCAGTGCTGGGCCTGTCGCT
CCCCATCTGGGCAATAGCGCTCATCTCCTTCGGCGTTGCCCTGCTGTTCGCCTTCTTCGTGTGG
CTGTTCGTGTGTCCGTGGATGAAGAGGAAAATAGCGGGCAGGTTAGAGAAGGAGAGTGCTCTGT
CCCGCGCGTCTGACGAAAGCCTCAGGAAGGTACAGGAAGCTGAGTCCCCTGTCTTTAAGGAGCT
TCCTGGTGCCAAAGCCAGTGATGACAGCGCTGTCCCCCTCACCAGTCTGGCTGGGGAGGCTGCG
GGGGCCTCAGAAGGCACGTCAGCAGGGAACCACCCCCGGGCTTCCTACGGCCGAGCACTTTCCA
TGACTCACGGCTCTGCAAAGTCACCCATCTCCAATGGAACCTTTGGCTTCGAAGGCCACATGAG
GAATGACGGTCACGTTTATCATACTGTACACAAAGACTCGGGACTCTACAAAGACTTGCTGCAC
AAAATCCATGTAGACAAGGGCCCCGAGGAGAAACCAGCTCAGGAAAACAACTACAGGCTGCTCC
GGAGGAACAACAGCTACACGTGCTACACGGCAGCCATCTGCGGCATGCCGGTGCACGCCACCTT
CAGGGCCTCGGACACCTCCTCCGCCCCCGAGGATAGCGAGAAGCTGGTGGGTGACACCGTGTCC
TATTCCAAGAAGAGGCTCCGCTACGACAGCTACTCCAGCTACTGCAACGCGGTGGCCGAGGCGG
AGATCGAGGCCGAAGAGGGCGGCGTGGAAATGAGGCTGGCCTCTGAGCTGACCGATCCTGACCA
GCCTCACGAGGATCCTGCGGAAGACGAGAAGGAGGAGAAGGACTCCGCAGAGGTCCACCTGCTC
TTCCACTTCCTGCAAGTCCTCACTGCCTGCTTTGGGTCCTTTGCTCACGGTGGCAACGATGTGA
GCAATGCTATCGGTCCCCTTGTGGCCCTGTGGCTGATATATAAACAAGGCGGAGTTACACAAGA
AGCTGCTACTCCAGTCTGGCTGCTGTTTTATGGGGGCGTTGGCATCTGCACAGGTCTCTGGGTT
TGGGGCAGAAGAGTGATCCAGACCATGGGGAAGGATCTCACACCCATCACACCGTCCAGTGGCT
TCACTATTGAGCTGGCCTCTGCCTTCACCGTGGTGATCGCCTCCAACATTGGGCTTCCCGTCAG
CACCACACACTGCAAGGTGGGCTCAGTGGTAGCCGTGGGCTGGATCCGCTCCCGGAAGGCTGTG
GACTGGCGCCTCTTCCGGAACATATTTATTGCCTGGTTCGTGACCGTGCCGGTGGCCGGACTTT
TCAGTGCTGCTATCATGGCTCTCCTCATGTATATATGTGGTTTTGTTTCTTCCAGTCGGTAAAT
GGCCACAGGGATGCTCTGACACGGATATGGTCCTCACACCTCCCACCCCTGCTTTCTCTGACAC
TTGCACACCCCTTCCACACACCTTCCTGATGGTGTCATATCACCCCTGCTTACCCAGGCCACAG
TTCATCTTCCAGAATTAACCTACCTGCTGTACATAGTAGTCTACATCAAGCTGATGTCGTGATG
ACACAATGTGGTGCGGTTACTTATATGAAATATATATTGTGTACCTAGAACAGGTAGCATTTAT
TTCAAACAAACTCAGAATGAACGTGGAGGGTATTGCCTAGAATGCAATATTCTGTTAACTGTAC
ATAATGATTTCAGTGGCAGTAAGCGTAGAGTATCAAATCCTTTTTTAAATACACTGTATATAGC
GGGATACAGTATACTTCATACAAACCCGGGCAGGCGGGTGGGCGGGTGAGTTCCGGCCCTTGTG
TGATTGCCCAGTGCTGGGACAGGTTTTCACAAGTGCTTTCTCTGAAGAGTGTGTTCGTGAGCGG
AGTCCGAGTTACTGTGTAATGTACCACGATTGCTTCTGTAAATACTTTCAACTGTAATTTTAAT
GCTAAGCTTCCCTCATACTTTTTTGATCGGAGAATTTTGGAAAGTACCAAAGAACGAGAGGATA
ACTCGCCAGTGTTACACCTTCCCACTGCTTGTCTCCCTTCCCACCGGCCCTGACAGTGGACCTG
GTTACTTCAGCCAGGCGAGCTTAGAACTCAGCCACCCACCAGCAGCAGCCAGGAGGCTGCCACA
CCAGATACTGGAAAGCTTGTTCAGTGGCCTTTCACTGTCACCAGCGCGGATGACATACAGCAGT
GGGGGTGTAGAATTAAACACTACATACATATCAAGTCCAACTCCAGGGTCCCTCCCCGTCGCAC
CCAGTGGCCTGAAAAGCAGGAATCTCGTTGCAGACATTAAAGCCAGTGAGGCTCTTGATGGGCT
CGGATGCTGCCAACTCAGGGCTTAGCCGGAAGTATGGGCGGGGACACTGGGCTTGGGGATCTTT
GAGGCCTTTTCTGTGGAGAACATCCGAGGTTCTCCTGTGGAGCCGCTGTTCTCTTCTGATGGCG
GCGGGAGAGCGTCGGTGTCACTAAAATGTTAAGAGCCTGAAACCATGGAAACGCTGCTAATATT
TTTATATTGACATACATTTTCACGGTACTTCATTGTAATTTTTTCATTAATCAAGCATATTAAA
TTTATAATAAAAAAGTGCCCCTCAAAAGTTCA

hide sequence

RefSeq Acc Id:

XM_039094427 ⟹ XP_038950355

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	69,460,850 - 69,541,417 (-)	NCBI

RefSeq Acc Id:

XM_039094428 ⟹ XP_038950356

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	69,460,850 - 69,537,515 (-)	NCBI

RefSeq Acc Id:

XM_039094430 ⟹ XP_038950358

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	69,460,850 - 69,534,097 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_058919	(Get FASTA)	NCBI Sequence Viewer
	XP_008769573	(Get FASTA)	NCBI Sequence Viewer
	XP_008769574	(Get FASTA)	NCBI Sequence Viewer
	XP_017455543	(Get FASTA)	NCBI Sequence Viewer
	XP_038950355	(Get FASTA)	NCBI Sequence Viewer
	XP_038950356	(Get FASTA)	NCBI Sequence Viewer
	XP_038950358	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA16532	(Get FASTA)	NCBI Sequence Viewer
	AAH70908	(Get FASTA)	NCBI Sequence Viewer
	AAP92549	(Get FASTA)	NCBI Sequence Viewer
	EDM09003	(Get FASTA)	NCBI Sequence Viewer
	EDM09004	(Get FASTA)	NCBI Sequence Viewer
	Q63488	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_058919 ⟸ NM_017223
- Peptide Label:	precursor
- UniProtKB:	Q63488 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAMDGYLWMVILGFIIAFILAFSVGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGA KVGETIRKGIIDVNLYNETVETLMAGEVSAMVGSAVWQLIASFLRLPISGTHCIVGSTIGFSLV AIGPKGVQWMELVKIVASWFISPLLSGFMSGVLFILIRMFILTKEDPVPNGLQALPLFYAATIA INVFSIMYTGAPVLGLSLPIWAIALISFGVALLFAFFVWLFVCPWMKRKIAGRLEKESALSRAS DESLRKVQEAESPVFKELPGAKASDDSAVPLTSLAGEAAGASEGTSAGNHPRASYGRALSMTHG SAKSPISNGTFGFEGHMRNDGHVYHTVHKDSGLYKDLLHKIHVDKGPEEKPAQENNYRLLRRNN SYTCYTAAICGMPVHATFRASDTSSAPEDSEKLVGDTVSYSKKRLRYDSYSSYCNAVAEAEIEA EEGGVEMRLASELTDPDQPHEDPAEDEKEEKDSAEVHLLFHFLQVLTACFGSFAHGGNDVSNAI GPLVALWLIYKQGGVTQEAATPVWLLFYGGVGICTGLWVWGRRVIQTMGKDLTPITPSSGFTIE LASAFTVVIASNIGLPVSTTHCKVGSVVAVGWIRSRKAVDWRLFRNIFIAWFVTVPVAGLFSAA IMALLMYICGFVSSSR hide sequence

RefSeq Acc Id:	XP_008769574 ⟸ XM_008771352
- Peptide Label:	isoform X1
- UniProtKB:	Q63488 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAMDGYLWMVILGFIIAFILAFSVGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGA KVGETIRKGIIDVNLYNETVETLMAGEVSAMVGSAVWQLIASFLRLPISGTHCIVGSTIGFSLV AIGPKGVQWMELVKIVASWFISPLLSGFMSGVLFILIRMFILTKEDPVPNGLQALPLFYAATIA INVFSIMYTGAPVLGLSLPIWAIALISFGVALLFAFFVWLFVCPWMKRKIAGRLEKESALSRAS DESLRKVQEAESPVFKELPGAKASDDSAVPLTSLAGEAAGASEGTSAGNHPRASYGRALSMTHG SAKSPISNGTFGFEGHMRNDGHVYHTVHKDSGLYKDLLHKIHVDKGPEEKPAQENNYRLLRRNN SYTCYTAAICGMPVHATFRASDTSSAPEDSEKLVGDTVSYSKKRLRYDSYSSYCNAVAEAEIEA EEGGVEMRLASELTDPDQPHEDPAEDEKEEKDSAEVHLLFHFLQVLTACFGSFAHGGNDVSNAI GPLVALWLIYKQGGVTQEAATPVWLLFYGGVGICTGLWVWGRRVIQTMGKDLTPITPSSGFTIE LASAFTVVIASNIGLPVSTTHCKVGSVVAVGWIRSRKAVDWRLFRNIFIAWFVTVPVAGLFSAA IMALLMYICGFVSSSR hide sequence

RefSeq Acc Id:	XP_008769573 ⟸ XM_008771351
- Peptide Label:	isoform X1
- UniProtKB:	Q63488 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAMDGYLWMVILGFIIAFILAFSVGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGA KVGETIRKGIIDVNLYNETVETLMAGEVSAMVGSAVWQLIASFLRLPISGTHCIVGSTIGFSLV AIGPKGVQWMELVKIVASWFISPLLSGFMSGVLFILIRMFILTKEDPVPNGLQALPLFYAATIA INVFSIMYTGAPVLGLSLPIWAIALISFGVALLFAFFVWLFVCPWMKRKIAGRLEKESALSRAS DESLRKVQEAESPVFKELPGAKASDDSAVPLTSLAGEAAGASEGTSAGNHPRASYGRALSMTHG SAKSPISNGTFGFEGHMRNDGHVYHTVHKDSGLYKDLLHKIHVDKGPEEKPAQENNYRLLRRNN SYTCYTAAICGMPVHATFRASDTSSAPEDSEKLVGDTVSYSKKRLRYDSYSSYCNAVAEAEIEA EEGGVEMRLASELTDPDQPHEDPAEDEKEEKDSAEVHLLFHFLQVLTACFGSFAHGGNDVSNAI GPLVALWLIYKQGGVTQEAATPVWLLFYGGVGICTGLWVWGRRVIQTMGKDLTPITPSSGFTIE LASAFTVVIASNIGLPVSTTHCKVGSVVAVGWIRSRKAVDWRLFRNIFIAWFVTVPVAGLFSAA IMALLMYICGFVSSSR hide sequence

RefSeq Acc Id:	XP_017455543 ⟸ XM_017600054
- Peptide Label:	isoform X1
- UniProtKB:	Q63488 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAMDGYLWMVILGFIIAFILAFSVGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGA KVGETIRKGIIDVNLYNETVETLMAGEVSAMVGSAVWQLIASFLRLPISGTHCIVGSTIGFSLV AIGPKGVQWMELVKIVASWFISPLLSGFMSGVLFILIRMFILTKEDPVPNGLQALPLFYAATIA INVFSIMYTGAPVLGLSLPIWAIALISFGVALLFAFFVWLFVCPWMKRKIAGRLEKESALSRAS DESLRKVQEAESPVFKELPGAKASDDSAVPLTSLAGEAAGASEGTSAGNHPRASYGRALSMTHG SAKSPISNGTFGFEGHMRNDGHVYHTVHKDSGLYKDLLHKIHVDKGPEEKPAQENNYRLLRRNN SYTCYTAAICGMPVHATFRASDTSSAPEDSEKLVGDTVSYSKKRLRYDSYSSYCNAVAEAEIEA EEGGVEMRLASELTDPDQPHEDPAEDEKEEKDSAEVHLLFHFLQVLTACFGSFAHGGNDVSNAI GPLVALWLIYKQGGVTQEAATPVWLLFYGGVGICTGLWVWGRRVIQTMGKDLTPITPSSGFTIE LASAFTVVIASNIGLPVSTTHCKVGSVVAVGWIRSRKAVDWRLFRNIFIAWFVTVPVAGLFSAA IMALLMYICGFVSSSR hide sequence

RefSeq Acc Id:

ENSRNOP00000026418 ⟸ ENSRNOT00000026418

RefSeq Acc Id:

ENSRNOP00000074540 ⟸ ENSRNOT00000084330

RefSeq Acc Id:	XP_038950355 ⟸ XM_039094427
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038950356 ⟸ XM_039094428
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038950358 ⟸ XM_039094430
- Peptide Label:	isoform X1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700188

Promoter ID:

EPDNEW_R10711

Type:

multiple initiation site

Name:

Slc20a2_1

Description:

solute carrier family 20 member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	74,408,045 - 74,408,105	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3699	AgrOrtholog
Ensembl Genes	ENSRNOG00000019490	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000026418	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000074540	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026418	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000084330	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7103640	IMAGE-MGC_LOAD
InterPro	Phos_transporter	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29502	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91730	IMAGE-MGC_LOAD
NCBI Gene	29502	ENTREZGENE
PANTHER	PTHR11101	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PHO4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc20a2	PhenoGen
TIGR	TC229822
UniProt	Q63488	ENTREZGENE
	Q7TP93_RAT	UniProtKB/TrEMBL
	S20A2_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc20a2	solute carrier family 20 member 2	Slc20a2	solute carrier family 20 (phosphate transporter), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-19	Slc20a2	solute carrier family 20 (phosphate transporter), member 2	Slc20a2	solute carrier family 20, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Slc20a2	solute carrier family 20, member 2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_function	acts as a carrier for amphotropic murine retroviruses	70008
gene_homology	homologous to the gibbon ape leukemia virus receptor	70008

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

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Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations