Gm12216 (predicted gene 12216) - Rat Genome Database

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Gene: Gm12216 (predicted gene 12216) Mus musculus
Analyze
Symbol: Gm12216
Name: predicted gene 12216
RGD ID: 3679582
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: 602-19-115
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,676,315 - 53,750,082 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,674,244 - 53,750,082 (-)EnsemblGRCm39 Ensembl
GRCm381153,785,489 - 53,859,256 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,783,418 - 53,859,256 (-)EnsemblGRCm38mm10GRCm38
MGSCv371153,598,991 - 53,672,758 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,652,986 - 53,702,566 (-)NCBIMGSCv36mm8
Celera1158,365,315 - 58,438,859 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10704283   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm12216
2452 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1168
Count of miRNA genes:611
Interacting mature miRNAs:722
Transcripts:ENSMUST00000117316, ENSMUST00000120776, ENSMUST00000121435, ENSMUST00000126535, ENSMUST00000135815, ENSMUST00000153206
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000117316   ⟹   ENSMUSP00000113077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,676,315 - 53,750,082 (-)Ensembl
GRCm38.p6 Ensembl1153,785,489 - 53,859,256 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120776   ⟹   ENSMUSP00000113458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,700,085 - 53,750,082 (-)Ensembl
GRCm38.p6 Ensembl1153,809,259 - 53,859,256 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121435   ⟹   ENSMUSP00000113293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,703,787 - 53,750,082 (-)Ensembl
GRCm38.p6 Ensembl1153,812,961 - 53,859,256 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,694,523 - 53,750,055 (-)Ensembl
GRCm38.p6 Ensembl1153,803,697 - 53,859,229 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,675,117 - 53,749,970 (-)Ensembl
GRCm38.p6 Ensembl1153,784,291 - 53,859,144 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,674,244 - 53,686,701 (-)Ensembl
GRCm38.p6 Ensembl1153,783,418 - 53,795,875 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220191   ⟹   ENSMUSP00000151907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,676,315 - 53,740,874 (-)Ensembl
GRCm38.p6 Ensembl1153,785,489 - 53,850,048 (-)Ensembl
RefSeq Acc Id: NR_033332
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,676,315 - 53,750,082 (-)NCBI
GRCm381153,785,489 - 53,859,256 (-)ENTREZGENE
MGSCv371153,598,991 - 53,672,758 (-)RGD
Celera1158,365,315 - 58,438,859 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2P827-F1-model_v2 AlphaFold A0A1W2P827 1-62 view protein structure

Promoters
RGD ID:8674632
Promoter ID:EPDNEW_M15347
Type:single initiation site
Name:Gm12216_2
Description:Mus musculus predicted gene 12216 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15348  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,845,585 - 53,845,645EPDNEW
RGD ID:8674648
Promoter ID:EPDNEW_M15348
Type:multiple initiation site
Name:Gm12216_1
Description:Mus musculus predicted gene 12216 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15347  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,859,229 - 53,859,289EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081769 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000117316 ENTREZGENE
MGD MGI:3650088 ENTREZGENE
NCBI Gene 622459 ENTREZGENE
PhenoGen Gm12216 PhenoGen
RNAcentral URS000075E78A RNACentral