PAICSP5 (phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 5) - Rat Genome Database

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Gene: PAICSP5 (phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 5) Homo sapiens
Analyze
Symbol: PAICSP5
Name: phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 5
RGD ID: 3497485
HGNC Page HGNC:38098
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PAICS  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387143,545,041 - 143,546,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7143,545,186 - 143,546,735 (-)EnsemblGRCh38hg38GRCh38
GRCh377143,242,134 - 143,243,426 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,952,256 - 142,953,526 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map7q35NCBI
CHM1_17143,179,357 - 143,180,134 (-)NCBICHM1_1
T2T-CHM13v2.07144,900,404 - 144,901,708 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,659,489 - 142,660,759NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:94
Interacting mature miRNAs:94
Transcripts:ENST00000430406
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 43 1 1
Below cutoff 183 258 147 46 258 15 454 133 454 18 197 145 31 107 305 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000430406
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7143,545,186 - 143,546,735 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PAICSP5 COSMIC
Ensembl Genes ENSG00000229877 Ensembl
GTEx ENSG00000229877 GTEx
HGNC ID HGNC:38098 ENTREZGENE
Human Proteome Map PAICSP5 Human Proteome Map
NCBI Gene 780811 ENTREZGENE