BRD7P5 (bromodomain containing 7 pseudogene 5) - Rat Genome Database

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Gene: BRD7P5 (bromodomain containing 7 pseudogene 5) Homo sapiens
Analyze
Symbol: BRD7P5
Name: bromodomain containing 7 pseudogene 5
RGD ID: 3322052
HGNC Page HGNC:37631
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: BRD7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381394,757,310 - 94,759,417 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1394,757,451 - 94,759,272 (-)EnsemblGRCh38hg38GRCh38
GRCh371395,409,564 - 95,411,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,207,702 - 94,231,244 (-)NCBINCBI36Build 36hg18NCBI36
Celera1376,257,655 - 76,259,476 (-)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1376,006,895 - 76,009,002 (-)NCBIHuRef
CHM1_11395,379,170 - 95,381,277 (-)NCBICHM1_1
T2T-CHM13v2.01393,960,816 - 93,962,923 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENST00000299197
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 26 10 14 7 70 7 120 11 32 32 60 61 3
Below cutoff 637 664 461 161 558 103 1893 556 1269 188 661 569 70 388 1173 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000299197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1394,757,451 - 94,759,272 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC BRD7P5 COSMIC
Ensembl Genes ENSG00000235768 Ensembl, ENTREZGENE
GTEx ENSG00000235768 GTEx
HGNC ID HGNC:37631 ENTREZGENE
Human Proteome Map BRD7P5 Human Proteome Map
NCBI Gene 100129259 ENTREZGENE