STMP1 (short transmembrane mitochondrial protein 1) - Rat Genome Database

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Gene: STMP1 (short transmembrane mitochondrial protein 1) Pan paniscus
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Symbol: STMP1
Name: short transmembrane mitochondrial protein 1
RGD ID: 329874940
Description: INVOLVED IN mitochondrial cytochrome c oxidase assembly (inferred); mitochondrial respirasome assembly (inferred); mitochondrial respiratory chain complex III assembly (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26172,488,791 - 172,500,802 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1724,499,046 - 24,511,240 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl7140,132,541 - 140,144,976 (+)Ensemblpanpan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
STMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26172,488,791 - 172,500,802 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1724,499,046 - 24,511,240 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl7140,132,541 - 140,144,976 (+)Ensemblpanpan1.1panPan2
STMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,662,514 - 135,676,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,662,496 - 135,693,418 (+)EnsemblGRCh38hg38GRCh38
GRCh377135,347,262 - 135,361,164 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,997,446 - 135,011,700 (+)NCBINCBI36Build 36hg18NCBI36
Celera7130,084,680 - 130,098,619 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,650,090 - 129,663,955 (+)NCBIHuRef
CHM1_17135,281,127 - 135,295,066 (+)NCBICHM1_1
T2T-CHM13v2.07136,969,813 - 136,983,713 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,691,647 - 134,705,586 (+)NCBI


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_057302768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000031254   ⟹   ENSPPAP00000008618
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7140,132,541 - 140,144,976 (+)Ensembl
RefSeq Acc Id: XM_057302768   ⟹   XP_057158751
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26172,488,791 - 172,500,802 (+)NCBI
NHGRI_mPanPan1724,499,046 - 24,511,240 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057158751 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008618.1
RefSeq Acc Id: XP_057158751   ⟸   XM_057302768
- UniProtKB: A0A2R9A058 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000008618   ⟸   ENSPPAT00000031254


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027554 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031254.1 UniProtKB/TrEMBL
InterPro STMP1 UniProtKB/TrEMBL
KEGG Report pps:100991811 UniProtKB/TrEMBL
NCBI Gene STMP1 ENTREZGENE
PANTHER SHORT TRANSMEMBRANE MITOCHONDRIAL PROTEIN 1 UniProtKB/TrEMBL
  SHORT TRANSMEMBRANE MITOCHONDRIAL PROTEIN 1 UniProtKB/TrEMBL
Pfam DUF4535 UniProtKB/TrEMBL
UniProt A0A2R9A058 ENTREZGENE, UniProtKB/TrEMBL