CLN3 (CLN3 lysosomal/endosomal transmembrane protein, battenin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CLN3 (CLN3 lysosomal/endosomal transmembrane protein, battenin) Pan paniscus
Analyze
Symbol: CLN3
Name: CLN3 lysosomal/endosomal transmembrane protein, battenin
RGD ID: 32731628
Description: ENCODES a protein that exhibits glycolipid binding (ortholog); sulfatide binding (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); glycerophospholipid biosynthetic process (ortholog); glycolipid transport (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); Disease Progression (ortholog); fundus dystrophy (ortholog); FOUND IN caveola (ortholog); cytoplasm (ortholog); early endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: battenin; battenin-like; LOC117978016; LOC117978769; LOC129394229
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21829,811,064 - 29,828,259 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11634,347,750 - 34,363,120 (-)NCBINHGRI_mPanPan1


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CLN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21829,811,064 - 29,828,259 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11634,347,750 - 34,363,120 (-)NCBINHGRI_mPanPan1
CLN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,466,653 - 28,492,082 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,474,111 - 28,495,575 (-)EnsemblGRCh38hg38GRCh38
GRCh371628,477,974 - 28,503,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,396,101 - 28,411,124 (-)NCBINCBI36Build 36hg18NCBI36
Build 341628,396,101 - 28,410,717NCBI
Celera1627,700,143 - 27,715,170 (+)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1626,514,259 - 26,529,549 (-)NCBIHuRef
CHM1_11629,500,208 - 29,515,233 (-)NCBICHM1_1
T2T-CHM13v2.01628,903,667 - 28,920,379 (+)NCBIT2T-CHM13v2.0
T2T-CHM13v2.01628,747,320 - 28,747,572 (-)NCBIT2T-CHM13v2.0


Expression


Sequence


RefSeq Acc Id: XM_055099563   ⟹   XP_054955538
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21829,811,064 - 29,828,258 (-)NCBI
NHGRI_mPanPan11634,347,750 - 34,363,120 (-)NCBI
RefSeq Acc Id: XM_055099565   ⟹   XP_054955540
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21829,811,064 - 29,828,258 (-)NCBI
NHGRI_mPanPan11634,347,750 - 34,363,120 (-)NCBI
RefSeq Acc Id: XM_055099566   ⟹   XP_054955541
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21829,811,064 - 29,827,152 (-)NCBI
NHGRI_mPanPan11634,347,750 - 34,363,102 (-)NCBI
RefSeq Acc Id: XM_063597423   ⟹   XP_063453493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21829,811,064 - 29,828,259 (-)NCBI
RefSeq Acc Id: XM_063597424   ⟹   XP_063453494
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21829,811,064 - 29,827,246 (-)NCBI
RefSeq Acc Id: XM_063597425   ⟹   XP_063453495
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21829,811,064 - 29,827,139 (-)NCBI
RefSeq Acc Id: XM_063597426   ⟹   XP_063453496
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21829,811,064 - 29,827,245 (-)NCBI
RefSeq Acc Id: XP_054955540   ⟸   XM_055099565
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054955538   ⟸   XM_055099563
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054955541   ⟸   XM_055099566
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063453493   ⟸   XM_063597423
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063453494   ⟸   XM_063597424
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063453496   ⟸   XM_063597426
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063453495   ⟸   XM_063597425
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC117978016 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-14 CLN3  CLN3 lysosomal/endosomal transmembrane protein, battenin  LOC129394229  battenin-like  Data Merged 737654 PROVISIONAL
2023-04-25 CLN3  CLN3 lysosomal/endosomal transmembrane protein, battenin  LOC117978016  battenin-like  Symbol and/or name change 5135510 APPROVED
2023-04-20 LOC117978016  battenin-like  LOC117978769  battenin-like  Data merged from RGD:32732398 737654 PROVISIONAL