Gm24175 (predicted gene, 24175) - Rat Genome Database

Name: Gm24175
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm24175 (predicted gene, 24175) Mus musculus

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Symbol:

Gm24175

Name:

predicted gene, 24175

RGD ID:

32717967

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	125,230,137 - 125,234,888 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	6	125,253,174 - 125,257,925 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Cytogenetic Map	6	F2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142079	Skmw15_m	skeletal muscle weight 15 (mouse)			Not determined		6	116829851	149588044	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83690851	146954059	Mouse
11252138	Clas1_m	carcinogen-induced lung adenoma susceptibility 1 (mouse)					6	112246918	146954059	Mouse
10449436	Pas17_m	pulmonary adenoma susceptibility 17 (mouse)					6	124334273	145601739	Mouse
1300887	Pabr1_m	plasma apolipoprotein B (human) regulator 1 (mouse)			Not determined		6	103754405	136400690	Mouse
1301915	Chab3_m	cholesterol absorption 3 (mouse)			Not determined		6	98908709	132916997	Mouse
1301083	Bhr5_m	bronchial hyperresponsiveness 5 (mouse)			Not determined		6	115694477	132578150	Mouse
1301658	Radpf3_m	radiation pulmonary fibrosis 3 (mouse)			Not determined		6	115219814	146330736	Mouse
10043923	Bhr7_m	bronchial hyperresponsiveness 7 (mouse)			Not determined		6	98219814	132219938	Mouse
4140980	Mvwf2_m	modifier of von Willebrand factor 2 (mouse)			Not determined			114345693	145601739	Mouse
4141940	W6q5_m	weight 6 weeks QTL 5 (mouse)			Not determined			96632912	146535124	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46912919	136400690	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48696934	125336963	Mouse
4141295	Rua_m	raffinose acetate tasting (mouse)			Not determined			115546805	149549364	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
1301509	Sluc3_m	susceptibility to lung cancer 3 (mouse)			Not determined		6	104480321	127019938	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48703490	125333748	Mouse
1301518	Bbaa5_m	B.burgdorferi-associated arthritis 5 (mouse)			Not determined		6	98483798	145881170	Mouse
11353842	Bmiq4_m	body mass index QTL 4 (mouse)					6	92584287	146330736	Mouse
1302131	Bmd8_m	bone mineral density 8 (mouse)			Not determined		6	99132089	133132228	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45290993	128811995	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
1357555	Tesq2_m	testis weight QTL 2 (mouse)			Not determined		6	96632912	146535124	Mouse
10043891	Tilss4_m	TNF-induced lethal shock susceptibility 3 (mouse)			Not determined		6	112246918	125333748	Mouse
4142416	Egq11_m	early growth QTL 11 (mouse)			Not determined			96632912	146535124	Mouse
1301923	Lith6_m	lithogenic gene 6 (mouse)			Not determined		6	98694477	132694676	Mouse
10412207	Cypr5_m	cytokine production 5 (mouse)			Not determined		6	110815180	144815323	Mouse
1300704	Cia3_m	collagen induced arthritis QTL 3 (mouse)			Not determined		6	96324286	130324483	Mouse
1301152	Athsq2_m	atherosclerosis susceptibility QTL 2 (mouse)			Not determined		6	117059949	149588044	Mouse
1301927	Etohcta6_m	ethanol conditioned taste aversion 6 (mouse)			Not determined		6	115578005	149578150	Mouse
13463481	Mcvq14_m	mean corpuscular volume QTL 14 (mouse)					6	111142448	145142541	Mouse
4141194	Cyx_m	cycloheximide tasting (mouse)			Not determined			115546805	149549364	Mouse
4141064	Ath37_m	atherosclerosis 37 (mouse)			Not determined		6	116641858	128495988	Mouse
1357806	Aaj3_m	anxiety in A/J 3 (mouse)			Not determined		6	104480321	136400690	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73476983	134676963	Mouse
4141889	Qui_m	quinine sensitivity, taste (mouse)			Not determined			115546805	149549364	Mouse
1301804	Bulb2_m	bulb size 2 (mouse)			Not determined		6	120416806	149588044	Mouse
1301292	Cfbw2_m	cystic fibrosis body weight 2 (mouse)			Not determined		6	94981612	128981699	Mouse
11040599	Lmr4b_m	leishmaniasis resistance 4b (mouse)					6	96324286	130324483	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_004933837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004933838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_869427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_869428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC140324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_004933837

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	125,230,137 - 125,234,887 (-)	NCBI

Sequence:

show sequence

CTGCAGAATACGGAACATGTGACTGAGGCTCCTGGGAGAGTTCAAGCTCCCAGGCCGCCCGAAG
ACCCACATCTCAAAGAAGCAGGCTTCACTAGGTTTCACGCGGGTGAATGTTAAGACATGGTCTC
TGAGAAGCAGCTCATCTCTAATGGCTGTGGGGTCAAATACATCCCCCATTCGTGGTCTCCTAGA
CAAGAGTCAGGCCCTGCATTCCTGATGTTCCACGTGTTCTCCTGAACCCTGCCAAATCACCCAT
GGCTTATCAGAGCCTGAGCCCTGGAAGCCCTAAAACCTGGGCTTGGCCATCCACCCTCCACAGG
CCAATTAAACTCACAAGGAACAGTGAAAAGCAGAAAAGGGAAGTTGATTCAGCGAGGCCACATT
AGGAAGAAGAGCAAAGAGTTCCAGCAACACCCACATCTATTTTTGGGGTCCTGATGTGAGGTTC
AGACTTAACTAGAGAAGTCCCGGCCAAGATACTGTCCCATCCATCGCTGTCAAATCATTGTCTC
CAATCTCTCCTGCAAGATGGTCTGACAAGTTCTCAGAATCATGTGAGATCGCTTTCCCCAAACC
ACGTTCCTCCTCTGCCTGGCACCAGACTTCAGTCTTCCTTCTTTGTTCGTATCAGGAAGATCAC
ACAGCCACAAGGAGGGCTGGATCAAGAGAGAGGCTGTTTGTGTTCTGTGCAGCGCTGGGGACAT
CAGGGAGGCTACGCACGATGCTTGGAGCCCGGTGAACCCTTGATGGCAGTTGCAGGTGCTGTTT
GCAGTGGATTAGGAGGTGTGGCCTTGGTAGAGGAAATATGTCACGGCTGGGGATGAGACAGGCT
TTGATGTTTAAAAGCCACTCTCCCTTCCCAGTTCTCTCCTTACCCCCTTCTGATTGCAGTGAGG
TGAGTCCTTGGTTCTCAGCTTTCAACTCTGGCTGCCAAGACTGCTGCCTGCTGCCATACTGTCT
CCACCATTATGGACCCTAAACCTCTGGAACCATAAGCCTCAATAAATCCTTCCTTCTAAAAGTT

hide sequence

RefSeq Acc Id:

XR_004933838

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	125,230,137 - 125,234,888 (-)	NCBI

Sequence:

show sequence

GCTGCAGAATACGGAACATGTGACTGAGGCTCCTGGGAGAGTTCAAGCTCCCAGGCCGCCCGAA
GACCCACATCTCAAAGAAGCAGGCTTCACTAGGTTTCACGCGGGTGAATGTTAAGACATGGTCT
CTGAGAAGCAGCTCATCTCTAATGGCTGTGGGGTCAAATACATCCCCCATTCGTGGTCTCCTAG
ACAAGAGTCAGGCCCTGCATTCCTGATGTTCCACGTGTTCTCCTGAACCCTGCCAAATCACCCA
TGGCTTATCAGAGCCTGAGCCCTGGAAGCCCTAAAACCTGGGCTTGGCCATCCACCCTCCACAG
GCCAATTAAACTCACAAGGAACAGTGAAAAGCAGAAAAGGGAAGTTGATTCAGCGAGGCCACAT
TAGGAAGAAGAGCAAAGAGTTCCAGCAACACCCACATCTATTTTTGGGGTCCTGATGTGAGGTT
CAGACTTAACTAGAGAAGTCCCGGCCAAGATACTGTCCCATCCATCGCTGTCAAATCATTGTCT
CCAATCTCTCCTGCAAGATGGTCTGACAAGTTCTCAGAATCATGAAGATCACACAGCCACAAGG
AGGGCTGGATCAAGAGAGAGGCTGTTTGTGTTCTGTGCAGCGCTGGGGACATCAGGGAGGCTAC
GCACGATGCTTGGAGCCCGGTGAACCCTTGATGGCAGGTATAGAGAGACATGGCTGGCACCACG
CTGCTTCATGCTGAACTTTGGTTTGCTCTGGTCTGATCATTCCTCACTATGTCCCCATTCCTCC
TTGTGAAGAGGAATATTCATTATGTGCTATTGTGTACTAAAAGCTTGTAACTTTTATTATTATT
ATTATTATTATTATTATTACATAGGAGAAACTCTAGACTTTTGAAAAGTGTTGGGACTCTTACA
GACTATAGGGACGTTTAGTGACAGGTGGAATTCATCTTATAAAATGGCTTTGCGATTATAGGGA
CAAAAGATGGGAAGTTTTGGCTTACAAGTAATGCATCTGGGTGTCATAGTGTCAAGGGCTGGAC
TTGTAATGGCTGACACTGAACTTGACGAGGTCTAGAATCCCTTAGGGGCGAATCTCTGAACATG
TTCATAAGAGAGTTTTTAGATTGGATTAACTGGGGTGGTTTGAATGAAAAATATCCCCCCCTAG
GACTAGGTGTTAGAATACTCGGTCTCCAGTTGCAGGTGCTGTTTGCAGTGGATTAGGAGGTGTG
GCCTTGGTAGAGGAAATATGTCACGGCTGGGGATGAGACAGGCTTTGATGTTTAAAAGCCACTC
TCCCTTCCCAGTTCTCTCCTTACCCCCTTCTGATTGCAGTGAGGTGAGTCCTTGGTTCTCAGCT
TTCAACTCTGGCTGCCAAGACTGCTGCCTGCTGCCATACTGTCTCCACCATTATGGACCCTAAA
CCTCTGGAACCATAAGCCTCAATAAATCCTTCCTTCTAAAAGTT

hide sequence

RefSeq Acc Id:

XR_869427

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	125,230,137 - 125,234,888 (-)	NCBI
GRCm38	6	125,253,174 - 125,257,925 (-)	NCBI

Sequence:

show sequence

GCTGCAGAATACGGAACATGTGACTGAGGCTCCTGGGAGAGTTCAAGCTCCCAGGCCGCCCGAA
GACCCACATCTCAAAGAAGCAGGCTTCACTAGGTTTCACGCGGGTGAATGTTAAGACATGGTCT
CTGAGAAGCAGCTCATCTCTAATGGCTGTGGGGTCAAATACATCCCCCATTCGTGGTCTCCTAG
ACAAGAGTCAGGCCCTGCATTCCTGATGTTCCACGTGTTCTCCTGAACCCTGCCAAATCACCCA
TGGCTTATCAGAGCCTGAGCCCTGGAAGCCCTAAAACCTGGGCTTGGCCATCCACCCTCCACAG
GCCAATTAAACTCACAAGGAACAGTGAAAAGCAGAAAAGGGAAGTTGATTCAGCGAGGCCACAT
TAGGAAGAAGAGCAAAGAGTTCCAGCAACACCCACATCTATTTTTGGGGTCCTGATGTGAGGTT
CAGACTTAACTAGAGAAGTCCCGGCCAAGATACTGTCCCATCCATCGCTGTCAAATCATTGTCT
CCAATCTCTCCTGCAAGATGGTCTGACAAGTTCTCAGAATCATGTGAGATCGCTTTCCCCAAAC
CACGTTCCTCCTCTGCCTGGCACCAGACTTCAGTCTTCCTTCTTTGTTCGTATCAGGAAGATCA
CACAGCCACAAGGAGGGCTGGATCAAGAGAGAGGCTGTTTGTGTTCTGTGCAGCGCTGGGGACA
TCAGGGAGGCTACGCACGATGCTTGGAGCCCGGTGAACCCTTGATGGCAGGTATAGAGAGACAT
GGCTGGCACCACGCTGCTTCATGCTGAACTTTGGTTTGCTCTGGTCTGATCATTCCTCACTATG
TCCCCATTCCTCCTTGTGAAGAGGAATATTCATTATGTGCTATTGTGTACTAAAAGCTTGTAAC
TTTTATTATTATTATTATTATTATTATTATTACATAGGAGAAACTCTAGACTTTTGAAAAGTGT
TGGGACTCTTACAGACTATAGGGACGTTTAGTGACAGGTGGAATTCATCTTATAAAATGGCTTT
GCGATTATAGGGACAAAAGATGGGAAGTTTTGGCTTACAAGTAATGCATCTGGGTGTCATAGTG
TCAAGGGCTGGACTTGTAATGGCTGACACTGAACTTGACGAGGTCTAGAATCCCTTAGGGGCGA
ATCTCTGAACATGTTCATAAGAGAGTTTTTAGATTGGATTAACTGGGGTGGTTTGAATGAAAAA
TATCCCCCCCTAGGACTAGGTGTTAGAATACTCGGTCTCCAGTTGCAGGTGCTGTTTGCAGTGG
ATTAGGAGGTGTGGCCTTGGTAGAGGAAATATGTCACGGCTGGGGATGAGACAGGCTTTGATGT
TTAAAAGCCACTCTCCCTTCCCAGTTCTCTCCTTACCCCCTTCTGATTGCAGTGAGGTGAGTCC
TTGGTTCTCAGCTTTCAACTCTGGCTGCCAAGACTGCTGCCTGCTGCCATACTGTCTCCACCAT
TATGGACCCTAAACCTCTGGAACCATAAGCCTCAATAAATCCTTCCTTCTAAAAGTT

hide sequence

RefSeq Acc Id:

XR_869428

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	125,230,137 - 125,234,886 (-)	NCBI
GRCm38	6	125,253,174 - 125,257,925 (-)	NCBI

Sequence:

show sequence

TGCAGAATACGGAACATGTGACTGAGGCTCCTGGGAGAGTTCAAGCTCCCAGGCCGCCCGAAGA
CCCACATCTCAAAGAAGCAGGCTTCACTAGGTTTCACGCGGGTGAATGTTAAGACATGGTCTCT
GAGAAGCAGCTCATCTCTAATGGCTGTGGGGTCAAATACATCCCCCATTCGTGGTCTCCTAGAC
AAGAGTCAGGCCCTGCATTCCTGATGTTCCACGTGTTCTCCTGAACCCTGCCAAATCACCCATG
GCTTATCAGAGCCTGAGCCCTGGAAGCCCTAAAACCTGGGCTTGGCCATCCACCCTCCACAGGC
CAATTAAACTCACAAGGAACAGTGAAAAGCAGAAAAGGGAAGTTGATTCAGCGAGGCCACATTA
GGAAGAAGAGCAAAGAGTTCCAGCAACACCCACATCTATTTTTGGGGTCCTGATGTGAGGTTCA
GACTTAACTAGAGAAGTCCCGGCCAAGATACTGTCCCATCCATCGCTGTCAAATCATTGTCTCC
AATCTCTCCTGCAAGATGGTCTGACAAGTTCTCAGAATCATGTGAGATCGCTTTCCCCAAACCA
CGTTCCTCCTCTGCCTGGCACCAGACTTCAGTCTTCCTTCTTTGTTCGTATCAGGAAGATCACA
CAGCCACAAGGAGGGCTGGATCAAGAGAGAGGCTGTTTGTGTTCTGTGCAGCGCTGGGGACATC
AGGGAGGCTACGCACGATGCTTGGAGCCCGGTGAACCCTTGATGGCAGTGAGGTGAGTCCTTGG
TTCTCAGCTTTCAACTCTGGCTGCCAAGACTGCTGCCTGCTGCCATACTGTCTCCACCATTATG
GACCCTAAACCTCTGGAACCATAAGCCTCAATAAATCCTTCCTTCTAAAAGTT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:5453952	ENTREZGENE
NCBI Gene	Gm24175	ENTREZGENE
PhenoGen	Gm24175	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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