ELOCP24 (elongin C pseudogene 24) - Rat Genome Database

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Gene: ELOCP24 (elongin C pseudogene 24) Homo sapiens
Analyze
Symbol: ELOCP24
Name: elongin C pseudogene 24
RGD ID: 3102873
HGNC Page HGNC:38160
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: TCEB1P24; TCEB1P25; transcription elongation factor B (SIII), polypeptide 1 pseudogene 25; transcription elongation factor B subunit 1 pseudogene 24
Related Functional Gene: ELOC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X155,978,992 - 155,979,325 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38Y57,165,512 - 57,165,845 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX155,978,992 - 155,979,325 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblY57,165,512 - 57,165,845 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y59,311,663 - 59,311,996 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X155,208,657 - 155,208,990 (-)NCBIGRCh37GRCh37hg19GRCh37
CeleraX155,365,145 - 155,365,478 (-)NCBICelera
Cytogenetic MapXq28 and Yq12NCBI
HuRefX143,691,590 - 143,691,923 (-)NCBIHuRef
CHM1_1X155,120,288 - 155,120,621 (-)NCBICHM1_1
T2T-CHM13v2.0Y62,403,984 - 62,404,317 (-)NCBIT2T-CHM13v2.0
T2T-CHM13v2.0X154,206,998 - 154,207,331 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:56
Interacting mature miRNAs:57
Transcripts:ENST00000456370
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 2 1 5 4 2 1 5 2 2 4
Below cutoff 22 10 10 1 24 1 30 16 23 17 41 20 5 23

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000456370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX155,978,992 - 155,979,325 (-)Ensembl
RefSeq Acc Id: ENST00000711266
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY57,165,512 - 57,165,845 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ELOCP24 COSMIC
Ensembl Genes ENSG00000228410 Ensembl, ENTREZGENE
  ENSG00000292367 Ensembl, ENTREZGENE
GTEx ENSG00000228410 GTEx
  ENSG00000292367 GTEx
HGNC ID HGNC:38160 ENTREZGENE
Human Proteome Map ELOCP24 Human Proteome Map
NCBI Gene 100287692 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-08 ELOCP24  elongin C pseudogene 24  TCEB1P24  transcription elongation factor B subunit 1 pseudogene 24  Symbol and/or name change 5135510 APPROVED
2016-04-05 TCEB1P24  transcription elongation factor B subunit 1 pseudogene 24  TCEB1P25  transcription elongation factor B (SIII), polypeptide 1 pseudogene 25  Data merged from RGD:2837481 737654 PROVISIONAL
2016-03-14 TCEB1P24  transcription elongation factor B subunit 1 pseudogene 24    transcription elongation factor B (SIII), polypeptide 1 pseudogene 24  Symbol and/or name change 5135510 APPROVED