CDC27P2 (cell division cycle 27 pseudogene 2) - Rat Genome Database

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Gene: CDC27P2 (cell division cycle 27 pseudogene 2) Homo sapiens
Analyze
Symbol: CDC27P2
Name: cell division cycle 27 pseudogene 2
RGD ID: 3077626
HGNC Page HGNC:38092
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CDC27  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y10,190,370 - 10,192,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY10,190,377 - 10,192,298 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y10,027,979 - 10,030,024 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y10,635,394 - 10,639,907 (-)NCBINCBI36Build 36hg18NCBI36
CeleraY3,365,820 - 3,367,729 (-)NCBICelera
Cytogenetic MapYp11.2NCBI
HuRefY7,367,082 - 7,368,996 (-)NCBIHuRef
T2T-CHM13v2.0Y10,509,498 - 10,511,543 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:54
Interacting mature miRNAs:54
Transcripts:ENST00000425026
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 2 1 1 3
Below cutoff 118 166 118 19 93 15 262 119 153 35 105 184 6 84 157

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000425026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY10,190,377 - 10,192,298 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CDC27P2 COSMIC
Ensembl Genes ENSG00000237447 Ensembl, ENTREZGENE
GTEx ENSG00000237447 GTEx
HGNC ID HGNC:38092 ENTREZGENE
Human Proteome Map CDC27P2 Human Proteome Map
NCBI Gene 100130277 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-22 CDC27P2  cell division cycle 27 pseudogene 2    cell division cycle 27 homolog (S. cerevisiae) pseudogene 2  Symbol and/or name change 5135510 APPROVED