HSPD1P16 (heat shock protein family D (Hsp60) member 1 pseudogene 16) - Rat Genome Database

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Gene: HSPD1P16 (heat shock protein family D (Hsp60) member 1 pseudogene 16) Homo sapiens
Analyze
Symbol: HSPD1P16
Name: heat shock protein family D (Hsp60) member 1 pseudogene 16
RGD ID: 3028765
HGNC Page HGNC:35128
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: HSPD1-13P
Related Functional Gene: HSPD1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386152,705,728 - 152,706,315 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6152,705,735 - 152,706,128 (+)EnsemblGRCh38hg38GRCh38
GRCh376153,026,863 - 153,027,450 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera6153,760,638 - 153,760,955 (+)NCBICelera
Cytogenetic Map6q25.2NCBI
HuRef6150,590,052 - 150,590,369 (+)NCBIHuRef
CHM1_16153,290,898 - 153,291,215 (+)NCBICHM1_1
T2T-CHM13v2.06153,907,049 - 153,907,636 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11237011   PMID:14574404   PMID:15496913   PMID:20193073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:100
Interacting mature miRNAs:102
Transcripts:ENST00000402302
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3
Low 100 96 108 9 58 5 586 95 156 5 73 205 4 418 278
Below cutoff 817 772 448 126 213 61 1552 872 632 61 315 561 65 553 1020 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000402302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6152,705,735 - 152,706,128 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HSPD1P16 COSMIC
Ensembl Genes ENSG00000218792 Ensembl
GTEx ENSG00000218792 GTEx
HGNC ID HGNC:35128 ENTREZGENE
Human Proteome Map HSPD1P16 Human Proteome Map
NCBI Gene 100462985 ENTREZGENE
PharmGKB PA164720751 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HSPD1P16  heat shock protein family D (Hsp60) member 1 pseudogene 16    heat shock 60kDa protein 1 (chaperonin) pseudogene 16  Symbol and/or name change 5135510 APPROVED