CD99P1 (CD99 molecule pseudogene 1) - Rat Genome Database

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Gene: CD99P1 (CD99 molecule pseudogene 1) Homo sapiens
Analyze
Symbol: CD99P1
Name: CD99 molecule pseudogene 1
RGD ID: 3004586
HGNC Page HGNC:7083
Description: INTERACTS WITH 2-hydroxypropanoic acid; acrylamide; all-trans-retinoic acid
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: CD99 antigen-like 1; CD99L1; CXYorf12; FLJ43159; MIC2R; NCRNA00103
Related Functional Gene: CD99  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y2,609,265 - 2,657,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38X2,609,265 - 2,657,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX2,609,415 - 2,623,453 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblX2,609,340 - 2,658,924 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblY2,609,340 - 2,658,924 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblY2,609,415 - 2,623,453 (+)EnsemblGRCh38hg38GRCh38
GRCh37X2,527,306 - 2,575,270 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37Y2,477,306 - 2,525,270 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X2,546,623 - 2,566,764 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX6,807,245 - 6,855,555 (+)NCBICelera
Cytogenetic MapX;YNCBI
HuRefX469,127 - 517,230 (+)NCBIHuRef
CHM1_1X2,556,998 - 2,605,221 (+)NCBICHM1_1
T2T-CHM13v2.0Y2,286,167 - 2,334,396 (+)NCBIT2T-CHM13v2.0
T2T-CHM13v2.0X2,222,371 - 2,270,615 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7833914   PMID:11181995   PMID:12477932   PMID:14702039   PMID:26269497   PMID:28611215   PMID:32393512  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:683
Count of miRNA genes:537
Interacting mature miRNAs:592
Transcripts:ENST00000414513, ENST00000430562, ENST00000431582, ENST00000435581, ENST00000527459
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 14 7 7 27 120 16 18 62 7 1 1 36 50 1
Low 2422 2755 1650 558 1907 400 4172 1934 2012 377 1382 1578 172 1168 2678 4
Below cutoff 2 224 68 64 12 64 64 243 1689 42 10 16 60

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000414513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,616,619 - 2,638,694 (+)Ensembl
RefSeq Acc Id: ENST00000430562
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,348 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000431582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,348 - 2,616,171 (+)Ensembl
RefSeq Acc Id: ENST00000435581
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,392 - 2,657,229 (+)Ensembl
RefSeq Acc Id: ENST00000527459
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,415 - 2,623,453 (+)Ensembl
RefSeq Acc Id: ENST00000685470
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,381 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000688123
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,381 - 2,658,924 (+)Ensembl
RefSeq Acc Id: ENST00000689252
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,374 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000691003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,340 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000701084
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX2,609,381 - 2,658,909 (+)Ensembl
RefSeq Acc Id: ENST00000711244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,415 - 2,623,453 (+)Ensembl
RefSeq Acc Id: ENST00000711245
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,340 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000711246
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,348 - 2,616,171 (+)Ensembl
RefSeq Acc Id: ENST00000711247
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,348 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000711248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,374 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000711249
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,381 - 2,638,329 (+)Ensembl
RefSeq Acc Id: ENST00000711250
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,381 - 2,658,909 (+)Ensembl
RefSeq Acc Id: ENST00000711251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,381 - 2,658,924 (+)Ensembl
RefSeq Acc Id: ENST00000711252
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,609,392 - 2,657,229 (+)Ensembl
RefSeq Acc Id: ENST00000711253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY2,616,619 - 2,638,694 (+)Ensembl
RefSeq Acc Id: NR_033380
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38Y2,609,265 - 2,657,229 (+)NCBI
GRCh38X2,609,265 - 2,657,229 (+)NCBI
HuRefX469,127 - 517,230 (+)NCBI
CHM1_1X2,556,998 - 2,605,221 (+)NCBI
T2T-CHM13v2.0Y2,286,167 - 2,334,396 (+)NCBI
T2T-CHM13v2.0X2,222,371 - 2,270,615 (+)NCBI
Sequence:
RefSeq Acc Id: NR_033381
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X2,609,265 - 2,638,329 (+)NCBI
GRCh38Y2,609,265 - 2,638,329 (+)NCBI
HuRefX469,127 - 517,230 (+)NCBI
CHM1_1X2,556,998 - 2,586,342 (+)NCBI
T2T-CHM13v2.0Y2,286,167 - 2,315,483 (+)NCBI
T2T-CHM13v2.0X2,222,371 - 2,251,701 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EAW98695 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC CD99P1 COSMIC
Ensembl Genes ENSG00000223773 Ensembl
  ENSG00000291040 Ensembl, ENTREZGENE
  ENSG00000292361 Ensembl
  ENSG00000292362 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000430562 ENTREZGENE
  ENST00000435581 ENTREZGENE
  ENST00000711247 ENTREZGENE
  ENST00000711252 ENTREZGENE
GTEx ENSG00000223773 GTEx
  ENSG00000291040 GTEx
  ENSG00000292361 GTEx
  ENSG00000292362 GTEx
HGNC ID HGNC:7083 ENTREZGENE
Human Proteome Map CD99P1 Human Proteome Map
NCBI Gene 401577 ENTREZGENE
PharmGKB PA30806 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 CD99P1  CD99 molecule pseudogene 1  CD99L1  CD99 antigen-like 1  Data merged from RGD:1347739 737654 PROVISIONAL
2014-09-17 CD99P1  CD99 molecule pseudogene 1  NCRNA00103  non-protein coding RNA 103  Symbol and/or name change 5135510 APPROVED