Kcnj6 (potassium inwardly-rectifying channel, subfamily J, member 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Kcnj6 (potassium inwardly-rectifying channel, subfamily J, member 6) Rattus norvegicus
Analyze
Symbol: Kcnj6
Name: potassium inwardly-rectifying channel, subfamily J, member 6
RGD ID: 2959
Description: Enables G-protein alpha-subunit binding activity. Involved in cellular response to morphine and response to electrical stimulus. Located in several cellular components, including cell surface; dendrite; and neuronal cell body membrane. Human ortholog(s) of this gene implicated in alcohol use disorder and heroin dependence. Orthologous to human KCNJ6 (potassium inwardly rectifying channel subfamily J member 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BIR1; G protein-activated inward rectifier potassium channel 2; GIRK-2; GIRK2; inward rectifier K(+) channel Kir3.2; KATP-2; LOC360252; potassium channel, inwardly rectifying subfamily J member 6; potassium channel, inwardly rectifying subfamily J, member 6; Potassium inwardly-rectifying channel subfamily J member 6; potassium voltage-gated channel subfamily J member 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21134,061,705 - 34,309,128 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,061,708 - 34,308,758 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1142,718,859 - 42,966,801 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01135,390,234 - 35,638,172 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01134,536,231 - 34,783,241 (-)NCBIRnor_WKY
Rnor_6.01135,011,007 - 35,262,362 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1135,024,196 - 35,099,383 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01138,602,645 - 38,692,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,025,118 - 35,116,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,096,649 - 35,172,743NCBI
Celera1134,144,832 - 34,389,786 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Effects of gonadal steroid hormones on GIRK2 gene transcription in the rat central nervous system. Ahangar N, etal., Neurosci Lett. 2008 Feb 6;431(3):201-5. Epub 2007 Dec 3.
2. Dysfunctional hippocampal inhibition in the Ts65Dn mouse model of Down syndrome. Best TK, etal., Exp Neurol. 2012 Feb;233(2):749-57. Epub 2011 Dec 8.
3. Cloning and functional expression of the cDNA encoding an inwardly-rectifying potassium channel expressed in pancreatic beta-cells and in the brain. Bond CT, etal., FEBS Lett 1995 Jun 19;367(1):61-6.
4. Inwardly rectifying potassium channels in rat retinal ganglion cells. Chen L, etal., Eur J Neurosci. 2004 Aug;20(4):956-64.
5. Neuronal activity regulates phosphorylation-dependent surface delivery of G protein-activated inwardly rectifying potassium channels. Chung HJ, etal., Proc Natl Acad Sci U S A. 2009 Jan 13;106(2):629-34. Epub 2008 Dec 31.
6. KCNJ6 is associated with adult alcohol dependence and involved in gene x early life stress interactions in adolescent alcohol drinking. Clarke TK, etal., Neuropsychopharmacology. 2011 May;36(6):1142-8. Epub 2011 Feb 9.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
9. Signal transduction pathway for the substance P-induced inhibition of rat Kir3 (GIRK) channel. Koike-Tani M, etal., J Physiol. 2005 Apr 15;564(Pt 2):489-500. Epub 2005 Feb 24.
10. A KCNJ6 (Kir3.2, GIRK2) gene polymorphism modulates opioid effects on analgesia and addiction but not on pupil size. Lotsch J, etal., Pharmacogenet Genomics. 2010 May;20(5):291-7.
11. A unique sorting nexin regulates trafficking of potassium channels via a PDZ domain interaction. Lunn ML, etal., Nat Neurosci. 2007 Oct;10(10):1249-59. Epub 2007 Sep 2.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. Alteration in expression of G-protein-activated inward rectifier K+-channel subunits GIRK1 and GIRK2 in the rat brain following electroconvulsive shock. Pei Q, etal., Neuroscience. 1999 May;90(2):621-7.
15. GOA pipeline RGD automated data pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Cloning of rat KATP-2 channel and decreased expression in pancreatic islets of male Zucker diabetic fatty rats. Stoffel M, etal., Biochem Biophys Res Commun 1995 Jul 26;212(3):894-9.
19. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:7926018   PMID:11883954   PMID:16780588   PMID:16797547   PMID:17296805   PMID:18698588   PMID:19118199   PMID:19558451   PMID:21653876   PMID:22098295   PMID:26199148   PMID:26460748  
PMID:28291959   PMID:28951616   PMID:31386893   PMID:36602604  


Genomics

Comparative Map Data
Kcnj6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21134,061,705 - 34,309,128 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,061,708 - 34,308,758 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1142,718,859 - 42,966,801 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01135,390,234 - 35,638,172 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01134,536,231 - 34,783,241 (-)NCBIRnor_WKY
Rnor_6.01135,011,007 - 35,262,362 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1135,024,196 - 35,099,383 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01138,602,645 - 38,692,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,025,118 - 35,116,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,096,649 - 35,172,743NCBI
Celera1134,144,832 - 34,389,786 (+)NCBICelera
Cytogenetic Map11q11NCBI
KCNJ6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382137,607,373 - 37,916,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2137,607,373 - 38,121,345 (-)EnsemblGRCh38hg38GRCh38
GRCh372138,979,675 - 39,288,760 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362137,918,655 - 38,210,566 (-)NCBINCBI36Build 36hg18NCBI36
Build 342137,918,656 - 38,210,566NCBI
Celera2124,194,896 - 24,487,265 (-)NCBICelera
Cytogenetic Map21q22.13NCBI
HuRef2124,470,127 - 24,761,921 (-)NCBIHuRef
CHM1_12138,557,922 - 38,850,112 (-)NCBICHM1_1
T2T-CHM13v2.02135,989,771 - 36,299,971 (-)NCBIT2T-CHM13v2.0
Kcnj6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391694,545,839 - 94,798,719 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1694,549,495 - 94,798,560 (-)EnsemblGRCm39 Ensembl
GRCm381694,744,980 - 94,997,696 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1694,748,636 - 94,997,701 (-)EnsemblGRCm38mm10GRCm38
MGSCv371694,970,290 - 95,219,303 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361694,857,497 - 95,106,494 (-)NCBIMGSCv36mm8
Celera1695,836,339 - 96,085,607 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1655.44NCBI
Kcnj6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540736,659,627 - 36,924,024 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540736,670,824 - 36,923,960 (-)NCBIChiLan1.0ChiLan1.0
KCNJ6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12137,339,201 - 37,634,876 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2137,340,738 - 37,558,688 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02123,983,485 - 24,284,759 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KCNJ6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13132,752,585 - 33,010,999 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3132,755,899 - 32,934,478 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3131,821,629 - 32,081,491 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03132,062,846 - 32,322,567 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3132,066,922 - 32,322,588 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13131,937,274 - 32,196,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03131,945,083 - 32,204,244 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03132,428,866 - 32,689,562 (-)NCBIUU_Cfam_GSD_1.0
Kcnj6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497132,225,573 - 32,465,141 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365005,065,107 - 5,239,854 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365005,002,668 - 5,164,511 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNJ6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13201,243,609 - 201,525,820 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113201,231,803 - 201,525,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213211,406,250 - 211,613,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNJ6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,569,659 - 81,878,047 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660549,424,667 - 9,732,757 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnj6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474525,947,561 - 26,127,171 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474525,879,671 - 26,130,998 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kcnj6
1985 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:70
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000066940
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat

Markers in Region
D11Rat97  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21134,107,000 - 34,107,128 (+)MAPPERmRatBN7.2
Rnor_6.01135,056,301 - 35,056,428NCBIRnor6.0
Rnor_5.01138,650,211 - 38,650,338UniSTSRnor5.0
RGSC_v3.41135,072,772 - 35,072,900RGDRGSC3.4
RGSC_v3.41135,072,773 - 35,072,900UniSTSRGSC3.4
RGSC_v3.11135,128,969 - 35,129,320RGD
Celera1134,344,651 - 34,344,778UniSTS
SHRSP x BN Map1110.4299UniSTS
SHRSP x BN Map1110.4299RGD
Cytogenetic Map11q11UniSTS
D14Rat111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141,559,312 - 1,559,527 (+)MAPPERmRatBN7.2
Rnor_6.0142,564,744 - 2,564,958NCBIRnor6.0
Rnor_5.0142,563,788 - 2,564,002UniSTSRnor5.0
Rnor_5.01138,631,875 - 38,632,089UniSTSRnor5.0
RGSC_v3.41135,054,437 - 35,054,651UniSTSRGSC3.4
RGSC_v3.4142,107,017 - 2,107,231UniSTSRGSC3.4
RGSC_v3.4142,107,016 - 2,107,231RGDRGSC3.4
RGSC_v3.41135,054,436 - 35,054,651RGDRGSC3.4
RGSC_v3.1142,107,017 - 2,107,231RGD
Celera141,580,055 - 1,580,269UniSTS
RH 3.4 Map1426.6UniSTS
RH 3.4 Map1426.6RGD
RH 2.0 Map1419.9RGD
SHRSP x BN Map140.0RGD
Cytogenetic Map11q11UniSTS
Cytogenetic Map14p22UniSTS
D11Mco6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21134,227,744 - 34,228,097 (+)MAPPERmRatBN7.2
Rnor_6.01135,177,895 - 35,178,247NCBIRnor6.0
Rnor_5.01138,769,861 - 38,770,213UniSTSRnor5.0
RGSC_v3.41135,208,370 - 35,208,723RGDRGSC3.4
RGSC_v3.41135,208,371 - 35,208,723UniSTSRGSC3.4
RGSC_v3.11135,264,613 - 35,264,966RGD
Celera1134,223,332 - 34,223,684UniSTS
Cytogenetic Map11q11UniSTS
UniSTS:143667  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21134,148,949 - 34,149,213 (+)MAPPERmRatBN7.2
Rnor_6.01135,098,241 - 35,098,504NCBIRnor6.0
Rnor_5.01138,692,371 - 38,692,634UniSTSRnor5.0
RGSC_v3.41135,115,900 - 35,116,163UniSTSRGSC3.4
Celera1134,302,962 - 34,303,225UniSTS
Cytogenetic Map11q11UniSTS
RH132210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21134,061,760 - 34,061,946 (+)MAPPERmRatBN7.2
Rnor_6.01135,011,066 - 35,011,251NCBIRnor6.0
Rnor_5.01138,602,696 - 38,602,881UniSTSRnor5.0
RGSC_v3.41135,025,169 - 35,025,354UniSTSRGSC3.4
Celera1134,389,550 - 34,389,735UniSTS
Cytogenetic Map11q11UniSTS
RH94617  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21134,076,099 - 34,076,242 (+)MAPPERmRatBN7.2
Rnor_6.01135,025,402 - 35,025,544NCBIRnor6.0
Rnor_5.01138,617,984 - 38,618,126UniSTSRnor5.0
RGSC_v3.41135,040,457 - 35,040,599UniSTSRGSC3.4
Celera1134,375,363 - 34,375,505UniSTS
Cytogenetic Map11q11UniSTS
AI412840  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21134,075,075 - 34,075,234 (+)MAPPERmRatBN7.2
Rnor_6.01135,024,378 - 35,024,536NCBIRnor6.0
Rnor_5.01138,616,960 - 38,617,118UniSTSRnor5.0
RGSC_v3.41135,039,433 - 35,039,591UniSTSRGSC3.4
Celera1134,376,371 - 34,376,529UniSTS
RH 3.4 Map11254.81UniSTS
Cytogenetic Map11q11UniSTS
UniSTS:259101  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21134,149,013 - 34,149,267 (+)MAPPERmRatBN7.2
Rnor_6.01135,098,305 - 35,098,558NCBIRnor6.0
Rnor_5.01138,692,435 - 38,692,688UniSTSRnor5.0
RGSC_v3.41135,115,964 - 35,116,217UniSTSRGSC3.4
Celera1134,302,908 - 34,303,161UniSTS
Cytogenetic Map11q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 38
Low 26
Below cutoff 14 8 1 10 1 8 9 8 15 11 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001393803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB073753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB073754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB073755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB073756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY095171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF156275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U21087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066940   ⟹   ENSRNOP00000059308
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1134,061,708 - 34,308,758 (-)Ensembl
Rnor_6.0 Ensembl1135,025,988 - 35,099,383 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079955   ⟹   ENSRNOP00000069879
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1134,067,409 - 34,150,092 (-)Ensembl
Rnor_6.0 Ensembl1135,024,196 - 35,098,883 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119355   ⟹   ENSRNOP00000079589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1134,067,409 - 34,308,758 (-)Ensembl
RefSeq Acc Id: NM_013192   ⟹   NP_037324
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21134,061,710 - 34,308,758 (-)NCBI
Rnor_6.01135,011,015 - 35,262,362 (-)NCBI
Rnor_5.01138,602,645 - 38,692,971 (-)NCBI
RGSC_v3.41135,025,118 - 35,116,500 (-)RGD
Celera1134,144,832 - 34,389,786 (+)RGD
Sequence:
RefSeq Acc Id: XM_039088045   ⟹   XP_038943973
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21134,061,705 - 34,309,128 (-)NCBI
RefSeq Acc Id: XM_039088046   ⟹   XP_038943974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21134,061,705 - 34,309,128 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_037324   ⟸   NM_013192
- UniProtKB: P48550 (UniProtKB/Swiss-Prot),   Q54A91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069879   ⟸   ENSRNOT00000079955
RefSeq Acc Id: ENSRNOP00000059308   ⟸   ENSRNOT00000066940
RefSeq Acc Id: XP_038943974   ⟸   XM_039088046
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038943973   ⟸   XM_039088045
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000079589   ⟸   ENSRNOT00000119355
Protein Domains
IRK   IRK_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P48550-F1-model_v2 AlphaFold P48550 1-425 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2959 AgrOrtholog
BioCyc Gene G2FUF-21751 BioCyc
Ensembl Genes ENSRNOG00000001658 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059308 ENTREZGENE
  ENSRNOP00000059308.2 UniProtKB/TrEMBL
  ENSRNOP00000069879.2 UniProtKB/TrEMBL
  ENSRNOP00000079589 ENTREZGENE
  ENSRNOP00000079589.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066940 ENTREZGENE
  ENSRNOT00000066940.3 UniProtKB/TrEMBL
  ENSRNOT00000079955.2 UniProtKB/TrEMBL
  ENSRNOT00000119355 ENTREZGENE
  ENSRNOT00000119355.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1400 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IRK_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir3.2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kir_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25743 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 25743 ENTREZGENE
PANTHER PTHR11767 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11767:SF19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IRK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IRK_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB KCNJ6 RGD
PhenoGen Kcnj6 PhenoGen
PIRSF GIRK_kir UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS KIR32CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KIRCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC234590
UniProt A0A0G2JWH0_RAT UniProtKB/TrEMBL
  F1LS53 ENTREZGENE
  KCNJ6_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q54A91 ENTREZGENE, UniProtKB/TrEMBL
  Q8QZW1_RAT UniProtKB/TrEMBL
UniProt Secondary F1LS53 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-19 Kcnj6  potassium inwardly-rectifying channel, subfamily J, member 6  Kcnj6  potassium voltage-gated channel subfamily J member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Kcnj6  potassium voltage-gated channel subfamily J member 6  Kcnj6  potassium channel, inwardly rectifying subfamily J, member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-01-26 Kcnj6  potassium channel, inwardly rectifying subfamily J, member 6  Kcnj6  potassium inwardly-rectifying channel, subfamily J, member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-23 Kcnj6  potassium inwardly-rectifying channel, subfamily J, member 6  Kcnj6_predicted  potassium inwardly-rectifying channel, subfamily J, member 6 (predicted)  Data Merged 737654 APPROVED
2005-01-12 Kcnj6_predicted  potassium inwardly-rectifying channel, subfamily J, member 6 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Kcnj6  Potassium inwardly-rectifying, channel, subfamily J, member 6      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in brain and insulinoma cells 728997