VDAC1P6 (voltage dependent anion channel 1 pseudogene 6) - Rat Genome Database

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Gene: VDAC1P6 (voltage dependent anion channel 1 pseudogene 6) Homo sapiens
Analyze
Symbol: VDAC1P6
Name: voltage dependent anion channel 1 pseudogene 6
RGD ID: 2923822
HGNC Page HGNC:37481
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: VDAC1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y5,206,365 - 5,208,078 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY5,207,215 - 5,208,069 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y5,074,406 - 5,076,119 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y5,134,308 - 5,136,277 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX91,736,833 - 91,738,629 (-)NCBICelera
Cytogenetic MapYp11.2NCBI
HuRefY2,912,396 - 2,914,107 (-)NCBIHuRef
T2T-CHM13v2.0Y4,885,908 - 4,887,621 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074   PMID:12815422   PMID:24858958  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:107
Interacting mature miRNAs:107
Transcripts:ENST00000430062
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
DXS8365  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y5,075,593 - 5,075,732UniSTSGRCh37
GRCh37X91,237,987 - 91,238,126UniSTSGRCh37
Build 36X91,124,643 - 91,124,782RGDNCBI36
CeleraX91,738,017 - 91,738,156RGD
Cytogenetic MapXq21.3UniSTS
Cytogenetic MapYp11.2UniSTS
HuRefY2,913,581 - 2,913,720UniSTS
DXYS221  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y5,077,182 - 5,077,310UniSTSGRCh37
GRCh37X91,239,576 - 91,239,704UniSTSGRCh37
Build 36X91,126,232 - 91,126,360RGDNCBI36
CeleraX91,739,606 - 91,739,734RGD
Cytogenetic MapYp11.2UniSTS
Cytogenetic MapXq21.3UniSTS
HuRefY2,915,170 - 2,915,298UniSTS
Whitehead-YAC Contig MapX UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 148 18 16 3 4 18
Below cutoff 671 898 381 133 333 85 1575 1102 1129 78 291 328 49 337 1204

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000430062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY5,207,215 - 5,208,069 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC VDAC1P6 COSMIC
Ensembl Genes ENSG00000231341 Ensembl
GTEx ENSG00000231341 GTEx
HGNC ID HGNC:37481 ENTREZGENE
Human Proteome Map VDAC1P6 Human Proteome Map
NCBI Gene 359800 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-19 VDAC1P6  voltage dependent anion channel 1 pseudogene 6    voltage-dependent anion channel 1 pseudogene 6  Symbol and/or name change 5135510 APPROVED