CCT6P2 (chaperonin containing TCP1 subunit 6 pseudogene 2) - Rat Genome Database

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Gene: CCT6P2 (chaperonin containing TCP1 subunit 6 pseudogene 2) Homo sapiens
Analyze
Symbol: CCT6P2
Name: chaperonin containing TCP1 subunit 6 pseudogene 2
RGD ID: 2837780
HGNC Page HGNC:35150
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: CCT6-1P
Related Functional Gene: CCT6A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38514,639,212 - 14,641,078 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl514,639,426 - 14,641,018 (-)EnsemblGRCh38hg38GRCh38
GRCh37514,639,321 - 14,641,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36514,692,532 - 14,694,127 (-)NCBINCBI36Build 36hg18NCBI36
Celera514,663,527 - 14,665,122 (-)NCBICelera
Cytogenetic Map5p15.2NCBI
HuRef514,612,134 - 14,613,729 (-)NCBIHuRef
CHM1_1514,638,994 - 14,640,589 (-)NCBICHM1_1
T2T-CHM13v2.0514,578,703 - 14,580,569 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:20193073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:100
Interacting mature miRNAs:101
Transcripts:ENST00000507234
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 4 41 4 2 388 2 10 14 5 13 19 1 1
Below cutoff 1327 1725 921 231 897 141 2468 1214 2091 204 892 943 92 754 1683

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000507234
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl514,639,426 - 14,641,018 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CCT6P2 COSMIC
Ensembl Genes ENSG00000250526 Ensembl, ENTREZGENE
GTEx ENSG00000250526 GTEx
HGNC ID HGNC:35150 ENTREZGENE
Human Proteome Map CCT6P2 Human Proteome Map
NCBI Gene 391739 ENTREZGENE
PharmGKB PA164717779 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-12 CCT6P2  chaperonin containing TCP1 subunit 6 pseudogene 2    chaperonin containing TCP1, subunit 6 (zeta) pseudogene 2  Symbol and/or name change 5135510 APPROVED