EEF1A1P19 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 19) - Rat Genome Database

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Gene: EEF1A1P19 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 19) Homo sapiens
Analyze
Symbol: EEF1A1P19
Name: eukaryotic translation elongation factor 1 alpha 1 pseudogene 19
RGD ID: 2837467
HGNC Page HGNC:37892
Description: INTERACTS WITH niclosamide
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EEF1A1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38543,494,878 - 43,496,522 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl543,495,073 - 43,496,454 (-)EnsemblGRCh38hg38GRCh38
GRCh37543,494,980 - 43,496,624 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera543,386,304 - 43,387,686 (-)NCBICelera
Cytogenetic Map5p12NCBI
HuRef543,446,302 - 43,447,684 (-)NCBIHuRef
CHM1_1543,496,441 - 43,497,823 (-)NCBICHM1_1
T2T-CHM13v2.0543,747,711 - 43,749,359 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
niclosamide  (EXP)

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:105
Interacting mature miRNAs:106
Transcripts:ENST00000513637
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 3 11 1 8 1 8 2 9 12 23 19 3 4
Low 2385 2162 1466 399 1594 242 3748 1236 2586 363 1420 1578 169 1199 2194 4
Below cutoff 43 817 238 214 345 213 596 947 1111 41 5 9 1 2 587

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000513637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl543,495,073 - 43,496,454 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EEF1A1P19 COSMIC
Ensembl Genes ENSG00000249855 Ensembl, ENTREZGENE
GTEx ENSG00000249855 GTEx
HGNC ID HGNC:37892 ENTREZGENE
Human Proteome Map EEF1A1P19 Human Proteome Map
NCBI Gene 100421796 ENTREZGENE