CSPG4BP (chondroitin sulfate proteoglycan family member 4B, pseudogene) - Rat Genome Database

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Gene: CSPG4BP (chondroitin sulfate proteoglycan family member 4B, pseudogene) Homo sapiens
Analyze
Symbol: CSPG4BP
Name: chondroitin sulfate proteoglycan family member 4B, pseudogene
RGD ID: 27375541
HGNC Page HGNC:51505
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); bisphenol A (ortholog); epoxiconazole (ortholog)
Type: pseudo (Ensembl: unitary_pseudogene)
RefSeq Status: INFERRED
Previously known as: AC112198.2; novel pseudogene
RGD Orthologs
Mouse
Alliance Genes
More Info more info ...
Related Functional Gene: CSPG4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38554,810,139 - 54,872,034 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl554,808,210 - 54,872,551 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,105,967 - 54,167,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q11.2NCBI
HuRef551,079,943 - 51,141,576 (-)NCBIHuRef
CHM1_1554,108,898 - 54,170,798 (-)NCBICHM1_1
T2T-CHM13v2.0555,637,782 - 55,699,689 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CSPG4BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38554,810,139 - 54,872,034 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl554,808,210 - 54,872,551 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,105,967 - 54,167,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q11.2NCBI
HuRef551,079,943 - 51,141,576 (-)NCBIHuRef
CHM1_1554,108,898 - 54,170,798 (-)NCBICHM1_1
T2T-CHM13v2.0555,637,782 - 55,699,689 (-)NCBIT2T-CHM13v2.0
Cspg4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,429,570 - 113,507,049 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,429,693 - 113,516,245 (+)EnsemblGRCm39 Ensembl
GRCm3813113,293,052 - 113,370,513 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13113,293,159 - 113,379,711 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713114,106,733 - 114,160,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,437,403 - 114,491,393 (+)NCBIMGSCv36mm8
MGSCv3613110,916,844 - 110,970,784 (+)NCBIMGSCv36mm8
Celera13117,606,070 - 117,684,810 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.94NCBI

Variants

.
Variants in CSPG4BP
1 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENST00000426589
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl554,808,210 - 54,872,551 (-)Ensembl

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:51505 AgrOrtholog
COSMIC CSPG4BP COSMIC
Ensembl Genes ENSG00000232517 Ensembl, ENTREZGENE
GTEx ENSG00000232517 GTEx
HGNC ID HGNC:51505 ENTREZGENE
Human Proteome Map CSPG4BP Human Proteome Map
NCBI Gene CSPG4BP ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-07 CSPG4BP  chondroitin sulfate proteoglycan family member 4B, pseudogene  CSPG4BP  chondroitin sulfate proteoglycan family member 4B, pseudogene  Data merged from RGD:16555359 737654 PROVISIONAL
2020-04-20 CSPG4BP  chondroitin sulfate proteoglycan family member 4B, pseudogene  AC112198.2  novel pseudogene  Symbol and/or name change 19259463 PROVISIONAL