Fbln5 (fibulin 5) - Rat Genome Database

Name: Fbln5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Fbln5 (fibulin 5) Rattus norvegicus

Analyze

Symbol:

Fbln5

Name:

fibulin 5

RGD ID:

2594

Description:

Predicted to have integrin binding activity; protein C-terminus binding activity; and protein homodimerization activity. Involved in regulation of cell growth. Localizes to extracellular space. Predicted to colocalize with elastic fiber. Human ortholog(s) of this gene implicated in age related macular degeneration; autosomal dominant cutis laxa 2; autosomal recessive cutis laxa type IA; and cutis laxa. Orthologous to human FBLN5 (fibulin 5); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',5,5'-tetrachlorobiphenyl; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

dance; developmental arteries and neural crest EGF-like protein; embryonic vascular EGF repeat-containing protein; EVEC; FIBL-5; fibulin-5

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBLN5 (fibulin 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Fbln5 (fibulin 5)	HGNC	OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Fbln5 (fibulin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBLN5 (fibulin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBLN5 (fibulin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbln5 (fibulin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBLN5 (fibulin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	FBLN5 (fibulin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbln5 (fibulin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EFEMP2 (EGF containing fibulin extracellular matrix protein 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	FBLN5 (fibulin 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Mus musculus (house mouse):	Fbln5 (fibulin 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	fbln5 (fibulin 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	120,899,219 - 120,977,829 (-)	NCBI
Rnor_6.0 Ensembl	6	125,644,804 - 125,723,944 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	125,644,797 - 125,723,957 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	134,856,694 - 134,935,853 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	126,018,541 - 126,098,234 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	126,022,288 - 126,102,052 (-)	NCBI
Celera	6	118,399,373 - 118,476,665 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adult respiratory distress syndrome (ISO)

arteriosclerosis (ISO)

autosomal dominant cutis laxa (ISO)

autosomal dominant cutis laxa 1 (ISO)

autosomal dominant cutis laxa 2 (ISO)

Autosomal Recessive Cutis Laxa (ISO)

autosomal recessive cutis laxa type IA (ISO)

axonal neuropathy (ISO)

congestive heart failure (ISO)

cutis laxa (ISO,ISS)

Emphysema (ISO)

fundus dystrophy (ISO)

macular degeneration (ISO)

Prostatic Neoplasms (ISO)

pulmonary hypertension (ISO)

respiratory failure (ISO)

Respiratory Tract Infections (ISO)

spinal muscular atrophy (ISO)

vascular disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid (EXP)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bortezomib (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

carmustine (EXP)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

L-methionine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methapyrilene (ISO)

methotrexate (EXP)

N-nitrosodiethylamine (EXP)

nickel dichloride (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

phosgene (ISO)

potassium dichromate (ISO)

progesterone (ISO)

propanal (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

tetrathiomolybdate(2-) (EXP)

tioguanine (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triclosan (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

elastic fiber assembly (IBA,ISO,ISS)

extracellular matrix organization (ISO)

intramembranous bone growth (ISO)

negative regulation of angiogenesis (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of osteoblast proliferation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

protein localization to cell surface (ISO)

regulation of cell growth (IEP)

regulation of removal of superoxide radicals (ISO)

secretion (ISO)

Cellular Component

collagen-containing extracellular matrix (ISO,ISS)

elastic fiber (ISO)

extracellular space (IDA)

Molecular Function

calcium ion binding (IEA)

integrin binding (ISO,ISS)

protein binding (IPI,ISO)

protein C-terminus binding (ISO)

protein homodimerization activity (ISO,ISS)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Kowal RC, etal., Circ Res 1999 May 28;84(10):1166-76.
4.	Loeys B, etal., Hum Mol Genet 2002 Sep 1;11(18):2113-8.
5.	MGD data from the GO Consortium
6.	Nakamura T, etal., J Biol Chem 1999 Aug 6;274(32):22476-83.
7.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	OMIM Disease Annotation Pipeline
9.	RGD automated data pipeline
10.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	RGD automated import pipeline for gene-chemical interactions
12.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13.	Yanagisawa H, etal., Nature 2002 Jan 10;415(6868):168-71.

Additional References at PubMed

PMID:11805835	PMID:15489334	PMID:15528465	PMID:17035250	PMID:17607303	PMID:18757743	PMID:19617354	PMID:20007835	PMID:20551380	PMID:20599547	PMID:20942562	PMID:22205540
PMID:23376485	PMID:23533145	PMID:24006456	PMID:26021746	PMID:26316108	PMID:26399686	PMID:27068509	PMID:28251683	PMID:28755400	PMID:32286390

Genomics

Comparative Map Data

Fbln5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	120,899,219 - 120,977,829 (-)	NCBI
Rnor_6.0 Ensembl	6	125,644,804 - 125,723,944 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	125,644,797 - 125,723,957 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	134,856,694 - 134,935,853 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	126,018,541 - 126,098,234 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	126,022,288 - 126,102,052 (-)	NCBI
Celera	6	118,399,373 - 118,476,665 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

FBLN5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	14	91,869,412 - 91,947,987 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	14	91,869,411 - 91,947,694 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	14	92,335,755 - 92,414,038 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	14	92,335,755 - 92,414,046 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	91,405,508 - 91,483,788 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	14	91,405,508 - 91,483,788	NCBI
Celera	14	72,388,374 - 72,466,655 (-)	NCBI
Cytogenetic Map	14	q32.12	NCBI
HuRef	14	72,516,509 - 72,594,687 (-)	NCBI		HuRef
CHM1_1	14	92,273,834 - 92,352,362 (-)	NCBI		CHM1_1

Fbln5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	101,712,824 - 101,785,541 (-)	NCBI	GRCm39		mm39
GRCm38	12	101,746,565 - 101,819,119 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	101,746,565 - 101,819,055 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	102,984,775 - 103,057,265 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	102,147,615 - 102,228,101 (-)	NCBI			mm8
Celera	12	102,955,562 - 103,028,678 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI

Fbln5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	14,071,410 - 14,145,070 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	14,073,927 - 14,144,644 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBLN5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	14	91,848,430 - 91,927,470 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	91,848,430 - 91,927,304 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	14	72,504,240 - 72,583,160 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

FBLN5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	8	1,162,923 - 1,231,719 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	8	1,162,203 - 1,231,809 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Fbln5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936733	136,374 - 200,106 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBLN5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	113,423,629 - 113,522,069 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	113,423,629 - 113,526,412 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	120,031,698 - 120,120,256 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBLN5
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	69,626,498 - 69,703,146 (-)	NCBI
ChlSab1.1 Ensembl	24	69,626,339 - 69,703,108 (-)	Ensembl

Fbln5
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	10,768,920 - 10,840,740 (+)	NCBI

Position Markers

D6Hmgc5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	125,661,793 - 125,661,956	NCBI	Rnor6.0
Rnor_5.0	6	134,873,689 - 134,873,852	UniSTS	Rnor5.0
Celera	6	118,415,903 - 118,416,066	UniSTS
Cytogenetic Map	6	q32	UniSTS

D6Hmgc15

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	125,661,792 - 125,661,959	NCBI	Rnor6.0
Rnor_5.0	6	134,873,688 - 134,873,855	UniSTS	Rnor5.0
Celera	6	118,415,902 - 118,416,069	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH133848

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	125,644,942 - 125,645,143	NCBI	Rnor6.0
Rnor_5.0	6	134,856,838 - 134,857,039	UniSTS	Rnor5.0
RGSC_v3.4	6	126,018,685 - 126,018,886	UniSTS	RGSC3.4
Celera	6	118,399,517 - 118,399,718	UniSTS
RH 3.4 Map	6	857.0	UniSTS
Cytogenetic Map	6	q32	UniSTS

AU047432

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	6	118,425,327 - 118,425,435	UniSTS
Cytogenetic Map	6	q32	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	75623277	136143011	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	75623277	136426962	Rat
1581550	Pur8	Proteinuria QTL 8			total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	75623393	136142742	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	75623393	136142742	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	88507712	133507712	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	88996335	139410483	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	89631358	134631358	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	89631358	134631358	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	91703409	136703409	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (VE) (CMO:0000132)	6	92879510	137879510	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	97949772	133849286	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	99273921	144273921	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	99273921	144792678	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	101207574	147991367	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	104363890	147991367	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	104381930	138066274	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	108154445	133849286	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	111134524	138065254	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	117355600	147991367	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	121224054	135658578	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	402
Count of miRNA genes:	220
Interacting mature miRNAs:	261
Transcripts:	ENSRNOT00000007004
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	31	10	6	11	6	2	2	8	35	29	11	2
Low	1	10	47	35	8	35	6	9	64		12		6
Below cutoff		2							2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF112153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF137350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000007004 ⟹ ENSRNOP00000007004

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	125,644,804 - 125,723,944 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084815 ⟹ ENSRNOP00000069614

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	125,645,601 - 125,723,732 (-)	Ensembl

RefSeq Acc Id:

NM_019153 ⟹ NP_062026

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	120,899,219 - 120,977,829 (-)	NCBI
Rnor_6.0	6	125,644,798 - 125,723,957 (-)	NCBI
Rnor_5.0	6	134,856,694 - 134,935,853 (-)	NCBI
RGSC_v3.4	6	126,018,541 - 126,098,234 (-)	RGD
Celera	6	118,399,373 - 118,476,665 (-)	RGD

Sequence:

show sequence

AGTGTTCATTTTTAACATTCCTCCTCCAATTGGCTTAATGCTGAATTACTGAAGGGGGTTAAGC
GAAACCAGGTGCCGGCGGCGAGGGCTCTGCAGTGGCTCCCAGCACCCGGCACTGTCCCCGGCCC
TCCGCGCAGCCCCGTTCGGCCCCTCGGAAACCAAGCTGCCCGGTCCCGCGCAGAGCCTGCCTTC
CTCAAATCACCTCTCCTCCCGCGCATCTTGGATATGCCAGGATTAAAAAGGATACTCACTGTCA
CCATCCTGGCACTGTGGCTTCCACATCCTGGGAATGCACAGCAACAGTGCACCAACGGCTTTGA
CCTGGACCGCCAGACAGGACAGTGTTTAGATATTGATGAATGTCGGACCATCCCTGAGGCTTGC
CGTGGGGACATGATGTGTGTCAACCAGAATGGCGGGTATCTGTGCATCCCTCGAACCAACCCAG
TGTATCGAGGGCCCTACTCCAATCCCTACTCTACATCCTACTCAGGCCCATACCCAGCAGCTGC
ACCACCAGTGCCAGCTTCCAACTACCCCACGATTTCCAGGCCTCTTGTCTGTCGCTTTGGGTAT
CAGATGGATGAAGGCAACCAGTGTGTGGATGTGGACGAGTGTGCGACAGATTCACACCAGTGCA
ACCCTACCCAGATCTGTATCAACACGGAAGGAGGGTACACCTGCTCCTGCACTGATGGGTACTG
GCTTCTGGAAGGGCAGTGCCTAGATATTGATGAATGTCGCTATGGTTACTGCCAGCAGCTCTGT
GCGAATGTTCCTGGATCCTATTCCTGTACGTGTAACCCTGGCTTCACCCTCAACGATGATGGAA
GGTCTTGCCAAGATGTGAACGAGTGTGAAACTGAGAACCCCTGTGTTCAGACCTGCGTCAACAC
CTATGGTTCTTTCATCTGCCGCTGTGACCCAGGATATGAACTGGAGGAAGATGGCATTCACTGC
AGTGATATGGATGAGTGCAGCTTCTCCGAGTTCCTCTGTCAACATGAGTGTGTGAACCAGCCGG
GCTCATACTTCTGCTCATGCCCTCCAGGCTACGTCTTGTTGGAAGATAACCGAAGCTGCCAGGA
TATCAATGAATGTGAGCACCGGAACCACACATGCACTCCCCTGCAGACTTGCTACAATCTGCAA
GGGGGCTTCAAATGTATCGACCCCATCGTCTGCGAGGAGCCTTATCTGCTGATTGGGGATAACC
GCTGTATGTGCCCTGCTGAGAATACTGGCTGCAGGGACCAGCCATTCACCATCTTGTTTCGGGA
CATGGATGTGGTATCAGGACGCTCTGTTCCTGCTGACATCTTCCAGATGCAAGCAACGACCCGA
TACCCTGGCGCCTATTACATTTTCCAGATCAAATCTGGGAACGAGGGTCGAGAGTTCTACATGC
GGCAAACAGGGCCTATCAGTGCCACCCTGGTGATGACACGCCCCATCAAAGGGCCTCGGGACAT
CCAGCTGGACTTGGAGATGATCACCGTCAACACTGTCATCAACTTCAGAGGCAGCTCCGTGATC
CGACTGCGGATATACGTGTCCCAGTATCCGTTCTGAGCCTCGGGTTAAGGCCTCTGACACTGCC
TTTTACCAGCGCCGAGGGACAGGAGGAGAGAAGAAACCAGCAAGAATGAGAGCGAGACAGACAT
TGCACCTTTCCTGCTGAACATCTCCCTGGGGCATCAGCCTAGCATCCTGACCCCTACCTGTACT
ATCGCAGACTGTCACTCTGAAGGACACCATGCCCCCAGTTCCTATGATGCAGTTATCCAAAAGT
ATTCTCCTTGACCCCTGATGTGAGGTTGCAAGTGACTCTCCAAGGCCTTCCATTTATTTCTATT
TTTTTTTAAAAAAAGGAAAATAGATTAGGTTTGCTGGGGTAGGAGTCTGTGTTCAAAGACTGAG
CAGCTTGTTCTTGCCTCTGCCCCTCCTTCCTCTATCTCTTGCTGCATTGCTGCTTTGCAAAAGT
CCTCATGAGCTCATGGGAAATGCTGGGTATAGCTATTTTGCTTCTTGCATGTGCTGAGAAGGCT
ATGGGAACACGTCACAGCAGGATCGAAGGTTTTTAAAGAGTCTATTTTAAAATCACGTCTGGTA
TTTTCAGCATAAGAGAAGTTTTAGTTGTTCTTACAATTTGTATGAGTGTTTAACCTTTTCTCGT
TCATTTTGAGTTTTTAAAGTGATAGAATTCCTTCCAGAAGGCCTCAGATACATGTTATGTTCAG
TCTTTCTAACCTCAGCCTTCCCTGCGTCTTAGCCCAGTTTTTATGAAGACCCCTTTAATCATGC
TTTCTTAAGAGTTTTTACCCAACTGGGTTGGAAGACAGAGGTATCCGGACTGATTAAATATTTG
AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240459 ⟹ XP_006240521

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	120,899,219 - 120,977,406 (-)	NCBI
Rnor_6.0	6	125,644,797 - 125,723,685 (-)	NCBI
Rnor_5.0	6	134,856,694 - 134,935,853 (-)	NCBI

Sequence:

show sequence

AGGCTTGAGAAACCTAACTCCAGACCTGATGGGTGGAAAATGGCTATGGCTGAGATTCCGCCTG
TGTCAGGGCACTGGAAAAGACTTTTAGCAAGTGATGCAATGACCCTGTTAATTACAAAAAGCTG
CGCTCATCTCGAAGTCTTGGTTTGGGAGTGGGGATTTTTCTAACAGCATCAGGAGTCAGCATCT
CGAGAGAGGCAGCAGACAGCCTCTTTGGATCATTTCTCTTTCTTTTTGGAAAGGGCAGCAACGC
TGTGCGCAGTTATTAAAATATCACACTACATATTTTTTAAATTTGGGAGACTGTTGACTACGGC
ACCAGCAACTGCTTTGCTGCGACGGCTGTGGGACAAGCAGAAGGAGTCTCCGAACACTCCTGTC
TGCGTTTGCTCTATGTGTGCGATTTACAGAGGGAATGGGACCTAGAAGTTTCGAGCCAACGAAC
AGTGGACACTGCAGACAGAGACGCATGATACTCACTGTCACCATCCTGGCACTGTGGCTTCCAC
ATCCTGGGAATGCACAGCAACAGTGCACCAACGGCTTTGACCTGGACCGCCAGACAGGACAGTG
TTTAGATATTGATGAATGTCGGACCATCCCTGAGGCTTGCCGTGGGGACATGATGTGTGTCAAC
CAGAATGGCGGGTATCTGTGCATCCCTCGAACCAACCCAGTGTATCGAGGGCCCTACTCCAATC
CCTACTCTACATCCTACTCAGGCCCATACCCAGCAGCTGCACCACCAGTGCCAGCTTCCAACTA
CCCCACGATTTCCAGGCCTCTTGTCTGTCGCTTTGGGTATCAGATGGATGAAGGCAACCAGTGT
GTGGATGTGGACGAGTGTGCGACAGATTCACACCAGTGCAACCCTACCCAGATCTGTATCAACA
CGGAAGGAGGGTACACCTGCTCCTGCACTGATGGGTACTGGCTTCTGGAAGGGCAGTGCCTAGA
TATTGATGAATGTCGCTATGGTTACTGCCAGCAGCTCTGTGCGAATGTTCCTGGATCCTATTCC
TGTACGTGTAACCCTGGCTTCACCCTCAACGATGATGGAAGGTCTTGCCAAGATGTGAACGAGT
GTGAAACTGAGAACCCCTGTGTTCAGACCTGCGTCAACACCTATGGTTCTTTCATCTGCCGCTG
TGACCCAGGATATGAACTGGAGGAAGATGGCATTCACTGCAGTGATATGGATGAGTGCAGCTTC
TCCGAGTTCCTCTGTCAACATGAGTGTGTGAACCAGCCGGGCTCATACTTCTGCTCATGCCCTC
CAGGCTACGTCTTGTTGGAAGATAACCGAAGCTGCCAGGATATCAATGAATGTGAGCACCGGAA
CCACACATGCACTCCCCTGCAGACTTGCTACAATCTGCAAGGGGGCTTCAAATGTATCGACCCC
ATCGTCTGCGAGGAGCCTTATCTGCTGATTGGGGATAACCGCTGTATGTGCCCTGCTGAGAATA
CTGGCTGCAGGGACCAGCCATTCACCATCTTGTTTCGGGACATGGATGTGGTATCAGGACGCTC
TGTTCCTGCTGACATCTTCCAGATGCAAGCAACGACCCGATACCCTGGCGCCTATTACATTTTC
CAGATCAAATCTGGGAACGAGGGTCGAGAGTTCTACATGCGGCAAACAGGGCCTATCAGTGCCA
CCCTGGTGATGACACGCCCCATCAAAGGGCCTCGGGACATCCAGCTGGACTTGGAGATGATCAC
CGTCAACACTGTCATCAACTTCAGAGGCAGCTCCGTGATCCGACTGCGGATATACGTGTCCCAG
TATCCGTTCTGAGCCTCGGGTTAAGGCCTCTGACACTGCCTTTTACCAGCGCCGAGGGACAGGA
GGAGAGAAGAAACCAGCAAGAATGAGAGCGAGACAGACATTGCACCTTTCCTGCTGAACATCTC
CCTGGGGCATCAGCCTAGCATCCTGACCCCTACCTGTACTATCGCAGACTGTCACTCTGAAGGA
CACCATGCCCCCAGTTCCTATGATGCAGTTATCCAAAAGTATTCTCCTTGACCCCTGATGTGAG
GTTGCAAGTGACTCTCCAAGGCCTTCCATTTATTTCTATTTTTTTTTTAAAAAAAGGAAAATAG
ATTAGGTTTGCTGGGGTAGGAGTCTGTGTTCAAAGACTGAGCAGCTTGTTCTTGCCTCTGCCCC
TCCTTCCTCTATCTCTTGCTGCATTGCTGCTTTGCAAAAGTCCTCATGAGCTCATGGGAAATGC
TGGGTATAGCTATTTTGCTTCTTGCATGTGCTGAGAAGGCTATGGGAACACGTCACAGCAGGAT
CGAAGGTTTTTAAAGAGTCTATTTTAAAATCACGTCTGGTATTTTCAGCATAAGAGAAGTTTTA
GTTGTTCTTACAATTTGTATGAGTGTTTAACCTTTTCTCGTTCATTTTGAGTTTTTAAAGTGAT
AGAATTCCTTCCAGAAGGCCTCAGATACATGTTATGTTCAGTCTTTCTAACCTCAGCCTTCCCT
GCGTCTTAGCCCAGTTTTTATGAAGACCCCTTTAATCATGCTTTCTTAAGAGTTTTTACCCAAC
TGGGTTGGAAGACAGAGGTATCCGGACTGATTAAATATTTGAAGAAAT

hide sequence

RefSeq Acc Id:

XM_017594053 ⟹ XP_017449542

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	125,644,797 - 125,717,267 (-)	NCBI

Sequence:

show sequence

TTGGCGACAGCTCAGTCGCTATGGTGTTCCTGCCATAGCTGTTGTTGAGTGTTGTCAAATCTTC
ATTTGCCTTCCCCACGGAAGAGCCCAGAGGTGGAATGGCTGAGTCGATGACGCCCTTGTTGCTT
ATGTTGTTTGTGCTAAGAGTTGCCTATGACCAAAGAATCATCTCTCTCCTCAACACGCATTTCT
GTTGGCTCTATTTTCCAGCACTGCCTCCACAAGGCTCCATAAGAATAGTAGCTTAAATGTTGTG
TTTCAGATCCTATAGCCCTCTGGTCAGAGGCCCAATACCTGTCTACCAGCCTAATATCAAAATA
TTGGTGAGCTGTGTTTCTCTGGCACTCAAGGAGAGAGAACATTTTTTTTTTCCTCATGGGAGCA
GTTGGTGGCATCCACCCTCCAGAAGTTATGGGTTAGGTCCTCCATCCTTGCTGGTTGTCTAGCG
AGGCCCTTCCCAGCTTCTAGAAACTGTGTATACCCCTTGGTTGGTAGTCTATGACGTTCACAAT
TATGGCTCCCTTCTTCCATTGTAACTCCCCTGACCAAGTCTCCTGCGTTTTCTGTTTTTAATCA
CTCACACAACTACACTGGGTATCCCACAGCATAACCTAGGATGGATGCTCCCATCTCAAAGCCT
GCTGATTGGCAACCTGAATGGAATCAGCCCTGTGACCTAAGGGCTCCCCAGGTTCCAGGAACGA
GGAAGTACTTTCTCAGTATGCCATCTAGTGGAGAGAAAATTAGACACAGTGAACGTTGGGACAA
ATTGGTGGGATAAGGTCATGGTCAAGTGGAGGTAACTGCGGTGGGCCCTGAAAAGGCAGAGAAG
AGAGGCAAACTTTATGCTCAGACTCAGTCAGGAGTCAGGTCCAGTTTGAATTGGGTATTGAAGG
ATGAATAGGGTCCTGAGAGATCTCAACTACAGTGGAAGGAACATCATAGACAAAGAACAGGGAT
ATAAAGGTAGTGCACGTACGGCATGCTGAAGACGGAGCATGGAGGGTGGAGAGGATAGGGCTTG
GCCACCCCACATTGGGGGAATAGTTAAATTCTTAATTAGACTTAATTTAGGTCAAATCATTTTT
CTGCCCTGAGTCACATCAACTGAGAACCGGAAGGGAGATCGTTGACTTAAAAGCATGAATTGAA
CCTTGAAGGCTTGGGCTCATTTTAGACTTACAGTACAAAGCTCTTTAGTTCAAGGATGCACTAC
AGGGCAAAGAGGGCCAAGGCTCCCTTTGCAGCCCATTGCTTTCCCTACAGAACAGACCACTGCA
CTCTAAACCACAGCATTCGCAGTTCCCAAGCTGGGAGTTGGCATGAATCTCTCAGATGACATGA
TGGGCGAGCTGCCCGAATCCAGGCATCCCTCCCCAGTCTCCAGATCCACACAGAGCAGGCTCCA
GAGCTGGATGCAGAGTCCAGCACCCGAAGCCAGGTCTGCTGCCCACTGGAGCCAGAGTTGGGGC
CTCCCTTGACTCCACCCAGACAAGGCTGATTTTTCTAGACAGACCACCACTCTCCTTCCAATGT
GAGCTGATCTCCAGCAGGGCTAGACGCAGCCTTGTTTTGCTGGCACCGTGTGAGCCAACTTGAA
AGCAATTGCTCTGCTTTCTCAATATTGATGAATGTCGGACCATCCCTGAGGCTTGCCGTGGGGA
CATGATGTGTGTCAACCAGAATGGCGGGTATCTGTGCATCCCTCGAACCAACCCAGTGTATCGA
GGGCCCTACTCCAATCCCTACTCTACATCCTACTCAGGCCCATACCCAGCAGCTGCACCACCAG
TGCCAGCTTCCAACTACCCCACGATTTCCAGGCCTCTTGTCTGTCGCTTTGGGTATCAGATGGA
TGAAGGCAACCAGTGTGTGGATGTGGACGAGTGTGCGACAGATTCACACCAGTGCAACCCTACC
CAGATCTGTATCAACACGGAAGGAGGGTACACCTGCTCCTGCACTGATGGGTACTGGCTTCTGG
AAGGGCAGTGCCTAGATATTGATGAATGTCGCTATGGTTACTGCCAGCAGCTCTGTGCGAATGT
TCCTGGATCCTATTCCTGTACGTGTAACCCTGGCTTCACCCTCAACGATGATGGAAGGTCTTGC
CAAGATGTGAACGAGTGTGAAACTGAGAACCCCTGTGTTCAGACCTGCGTCAACACCTATGGTT
CTTTCATCTGCCGCTGTGACCCAGGATATGAACTGGAGGAAGATGGCATTCACTGCAGTGATAT
GGATGAGTGCAGCTTCTCCGAGTTCCTCTGTCAACATGAGTGTGTGAACCAGCCGGGCTCATAC
TTCTGCTCATGCCCTCCAGGCTACGTCTTGTTGGAAGATAACCGAAGCTGCCAGGATATCAATG
AATGTGAGCACCGGAACCACACATGCACTCCCCTGCAGACTTGCTACAATCTGCAAGGGGGCTT
CAAATGTATCGACCCCATCGTCTGCGAGGAGCCTTATCTGCTGATTGGGGATAACCGCTGTATG
TGCCCTGCTGAGAATACTGGCTGCAGGGACCAGCCATTCACCATCTTGTTTCGGGACATGGATG
TGGTATCAGGACGCTCTGTTCCTGCTGACATCTTCCAGATGCAAGCAACGACCCGATACCCTGG
CGCCTATTACATTTTCCAGATCAAATCTGGGAACGAGGGTCGAGAGTTCTACATGCGGCAAACA
GGGCCTATCAGTGCCACCCTGGTGATGACACGCCCCATCAAAGGGCCTCGGGACATCCAGCTGG
ACTTGGAGATGATCACCGTCAACACTGTCATCAACTTCAGAGGCAGCTCCGTGATCCGACTGCG
GATATACGTGTCCCAGTATCCGTTCTGAGCCTCGGGTTAAGGCCTCTGACACTGCCTTTTACCA
GCGCCGAGGGACAGGAGGAGAGAAGAAACCAGCAAGAATGAGAGCGAGACAGACATTGCACCTT
TCCTGCTGAACATCTCCCTGGGGCATCAGCCTAGCATCCTGACCCCTACCTGTACTATCGCAGA
CTGTCACTCTGAAGGACACCATGCCCCCAGTTCCTATGATGCAGTTATCCAAAAGTATTCTCCT
TGACCCCTGATGTGAGGTTGCAAGTGACTCTCCAAGGCCTTCCATTTATTTCTATTTTTTTTTT
AAAAAAAGGAAAATAGATTAGGTTTGCTGGGGTAGGAGTCTGTGTTCAAAGACTGAGCAGCTTG
TTCTTGCCTCTGCCCCTCCTTCCTCTATCTCTTGCTGCATTGCTGCTTTGCAAAAGTCCTCATG
AGCTCATGGGAAATGCTGGGTATAGCTATTTTGCTTCTTGCATGTGCTGAGAAGGCTATGGGAA
CACGTCACAGCAGGATCGAAGGTTTTTAAAGAGTCTATTTTAAAATCACGTCTGGTATTTTCAG
CATAAGAGAAGTTTTAGTTGTTCTTACAATTTGTATGAGTGTTTAACCTTTTCTCGTTCATTTT
GAGTTTTTAAAGTGATAGAATTCCTTCCAGAAGGCCTCAGATACATGTTATGTTCAGTCTTTCT
AACCTCAGCCTTCCCTGCGTCTTAGCCCAGTTTTTATGAAGACCCCTTTAATCATGCTTTCTTA
AGAGTTTTTACCCAACTGGGTTGGAAGACAGAGGTATCCGGACTGATTAAATATTTGAAGAAAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_062026	(Get FASTA)	NCBI Sequence Viewer
	XP_006240521	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD25101	(Get FASTA)	NCBI Sequence Viewer
	AAD41769	(Get FASTA)	NCBI Sequence Viewer
	AAH78845	(Get FASTA)	NCBI Sequence Viewer
	EDL81735	(Get FASTA)	NCBI Sequence Viewer
	Q9WVH8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_062026 ⟸ NM_019153
- Peptide Label:	precursor
- UniProtKB:	Q9WVH8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPGLKRILTVTILALWLPHPGNAQQQCTNGFDLDRQTGQCLDIDECRTIPEACRGDMMCVNQNG GYLCIPRTNPVYRGPYSNPYSTSYSGPYPAAAPPVPASNYPTISRPLVCRFGYQMDEGNQCVDV DECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTC NPGFTLNDDGRSCQDVNECETENPCVQTCVNTYGSFICRCDPGYELEEDGIHCSDMDECSFSEF LCQHECVNQPGSYFCSCPPGYVLLEDNRSCQDINECEHRNHTCTPLQTCYNLQGGFKCIDPIVC EEPYLLIGDNRCMCPAENTGCRDQPFTILFRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIK SGNEGREFYMRQTGPISATLVMTRPIKGPRDIQLDLEMITVNTVINFRGSSVIRLRIYVSQYPF hide sequence

RefSeq Acc Id:

XP_006240521 ⟸ XM_006240459

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGPRSFEPTNSGHCRQRRMILTVTILALWLPHPGNAQQQCTNGFDLDRQTGQCLDIDECRTIPE
ACRGDMMCVNQNGGYLCIPRTNPVYRGPYSNPYSTSYSGPYPAAAPPVPASNYPTISRPLVCRF
GYQMDEGNQCVDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQ
LCANVPGSYSCTCNPGFTLNDDGRSCQDVNECETENPCVQTCVNTYGSFICRCDPGYELEEDGI
HCSDMDECSFSEFLCQHECVNQPGSYFCSCPPGYVLLEDNRSCQDINECEHRNHTCTPLQTCYN
LQGGFKCIDPIVCEEPYLLIGDNRCMCPAENTGCRDQPFTILFRDMDVVSGRSVPADIFQMQAT
TRYPGAYYIFQIKSGNEGREFYMRQTGPISATLVMTRPIKGPRDIQLDLEMITVNTVINFRGSS
VIRLRIYVSQYPF

hide sequence

RefSeq Acc Id:

XP_017449542 ⟸ XM_017594053

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMCVNQNGGYLCIPRTNPVYRGPYSNPYSTSYSGPYPAAAPPVPASNYPTISRPLVCRFGYQMD
EGNQCVDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANV
PGSYSCTCNPGFTLNDDGRSCQDVNECETENPCVQTCVNTYGSFICRCDPGYELEEDGIHCSDM
DECSFSEFLCQHECVNQPGSYFCSCPPGYVLLEDNRSCQDINECEHRNHTCTPLQTCYNLQGGF
KCIDPIVCEEPYLLIGDNRCMCPAENTGCRDQPFTILFRDMDVVSGRSVPADIFQMQATTRYPG
AYYIFQIKSGNEGREFYMRQTGPISATLVMTRPIKGPRDIQLDLEMITVNTVINFRGSSVIRLR
IYVSQYPF

hide sequence

RefSeq Acc Id:

ENSRNOP00000069614 ⟸ ENSRNOT00000084815

RefSeq Acc Id:

ENSRNOP00000007004 ⟸ ENSRNOT00000007004

Protein Domains

EGF-like

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694778

Promoter ID:

EPDNEW_R5303

Type:

initiation region

Name:

Fbln5_1

Description:

fibulin 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	125,723,863 - 125,723,923	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2594	AgrOrtholog
Ensembl Genes	ENSRNOG00000050539	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000007004	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000069614	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007004	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000084815	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7123752	IMAGE-MGC_LOAD
InterPro	cEGF	UniProtKB/Swiss-Prot
	EGF-like_Ca-bd_dom	UniProtKB/Swiss-Prot
	EGF-like_dom	UniProtKB/Swiss-Prot
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/Swiss-Prot
	EGF_Ca-bd_CS	UniProtKB/Swiss-Prot
	Fibulin-5	UniProtKB/Swiss-Prot
	Growth_fac_rcpt_cys_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:29158	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93487	IMAGE-MGC_LOAD
NCBI Gene	29158	ENTREZGENE
PANTHER	PTHR24050:SF21	UniProtKB/Swiss-Prot
Pfam	cEGF	UniProtKB/Swiss-Prot
	EGF_CA	UniProtKB/Swiss-Prot
PhenoGen	Fbln5	PhenoGen
PROSITE	ASX_HYDROXYL	UniProtKB/Swiss-Prot
	EGF_2	UniProtKB/Swiss-Prot
	EGF_3	UniProtKB/Swiss-Prot
	EGF_CA	UniProtKB/Swiss-Prot
SMART	EGF	UniProtKB/Swiss-Prot
	EGF_CA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57184	UniProtKB/Swiss-Prot
UniProt	FBLN5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q9R284	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Fbln5	fibulin 5			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains Ca2+ binding epidermal growth factor-like repeats	632806
gene_regulation	upregulated after vascular injury	632806

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM