Mir429 (microRNA 429) - Rat Genome Database

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Gene: Mir429 (microRNA 429) Rattus norvegicus
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Symbol: Mir429
Name: microRNA 429
RGD ID: 2325537
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing translational repressor activity. Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to act upstream of or within cellular response to amino acid stimulus and sensory perception of sound. Biomarker of breast cancer. Orthologous to human MIR429 (microRNA 429); INTERACTS WITH 2-acetamidofluorene; amphetamine; benzophenone.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-429; rno-mir-429
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,929,682 - 171,929,766 (-)NCBIGRCr8
mRatBN7.25166,647,459 - 166,647,543 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,647,459 - 166,647,543 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,351,019 - 169,351,103 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,172,441 - 171,172,525 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,134,975 - 171,135,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,488,331 - 173,488,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,488,331 - 173,488,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,962,353 - 176,962,437 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5164,848,262 - 164,848,346 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Correlation of the Levels of microRNA with Cell Composition of Axillary Lymph Node in Wistar Rats with Breast Cancer. Kabakov AV, etal., Bull Exp Biol Med. 2020 Feb;168(4):500-502. doi: 10.1007/s10517-020-04740-w. Epub 2020 Mar 10.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15735639   PMID:16381832   PMID:16766679   PMID:20548288   PMID:23646144   PMID:26431850   PMID:29150958   PMID:29958992   PMID:32004541   PMID:37245297   PMID:37605094  


Genomics

Comparative Map Data
Mir429
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,929,682 - 171,929,766 (-)NCBIGRCr8
mRatBN7.25166,647,459 - 166,647,543 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,647,459 - 166,647,543 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,351,019 - 169,351,103 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,172,441 - 171,172,525 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,134,975 - 171,135,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,488,331 - 173,488,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,488,331 - 173,488,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,962,353 - 176,962,437 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5164,848,262 - 164,848,346 (-)NCBICelera
Cytogenetic Map5q36NCBI
MIR429
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,169,005 - 1,169,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,169,005 - 1,169,087 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,104,385 - 1,104,467 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,094,247 - 1,094,329 (+)NCBINCBI36Build 36hg18NCBI36
Celera11,478,391 - 1,478,473 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1375,766 - 375,848 (+)NCBIHuRef
CHM1_111,091,357 - 1,091,439 (+)NCBICHM1_1
T2T-CHM13v2.01597,602 - 597,684 (+)NCBIT2T-CHM13v2.0
Mir429
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,138,362 - 156,138,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,138,362 - 156,138,444 (-)EnsemblGRCm39 Ensembl
GRCm384156,053,905 - 156,053,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,053,905 - 156,053,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,428,014 - 155,428,096 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera4158,316,301 - 158,316,383 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.95NCBI

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:3333
Count of gene targets:2571
Count of transcripts:2743
Interacting mature miRNAs:rno-miR-429
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
renal system
reproductive system
respiratory system
1 2 9 1 1 1 13 1 10 9 8

Sequence


Ensembl Acc Id: ENSRNOT00000053718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,647,459 - 166,647,543 (-)Ensembl
Rnor_6.0 Ensembl5173,488,331 - 173,488,415 (-)Ensembl
RefSeq Acc Id: NR_031949
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,929,682 - 171,929,766 (-)NCBI
mRatBN7.25166,647,459 - 166,647,543 (-)NCBI
Rnor_6.05173,488,331 - 173,488,415 (-)NCBI
Rnor_5.05176,962,353 - 176,962,437 (-)NCBI
Celera5164,848,262 - 164,848,346 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325537 AgrOrtholog
BioCyc Gene G2FUF-38872 BioCyc
Ensembl Genes ENSRNOG00000035595 Ensembl
miRBase MI0001643 ENTREZGENE
NCBI Gene 100314067 ENTREZGENE
PhenoGen Mir429 PhenoGen
RatGTEx ENSRNOG00000035595 RatGTEx
RNAcentral URS00002D8367 RNACentral
  URS000075D37C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir429  microRNA 429  Mir429  microRNA mir-429  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir429  microRNA mir-429      Symbol and Name status set to provisional 70820 PROVISIONAL