Mir598 (microRNA 598) - Rat Genome Database

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Gene: Mir598 (microRNA 598) Rattus norvegicus
Analyze
Symbol: Mir598
Name: microRNA 598
RGD ID: 2325416
Description: Predicted to act upstream of or within cellular response to lipopolysaccharide. Orthologous to human MIR598 (microRNA 598); INTERACTS WITH cadmium atom; cadmium dichloride; furan.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mir598-1; rno-mir-598; rno-mir-598-1
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,138,609 - 42,138,687 (+)NCBIGRCr8
mRatBN7.21537,962,692 - 37,962,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,962,692 - 37,962,771 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,819,872 - 39,819,950 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,970,565 - 40,970,643 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,423,289 - 39,423,367 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,057,496 - 47,057,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,057,496 - 47,057,575 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,816,188 - 50,816,266 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1537,645,076 - 37,645,154 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:17604727   PMID:20403161   PMID:21247879  


Genomics

Comparative Map Data
Mir598
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,138,609 - 42,138,687 (+)NCBIGRCr8
mRatBN7.21537,962,692 - 37,962,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,962,692 - 37,962,771 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,819,872 - 39,819,950 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,970,565 - 40,970,643 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,423,289 - 39,423,367 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,057,496 - 47,057,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,057,496 - 47,057,575 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,816,188 - 50,816,266 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1537,645,076 - 37,645,154 (+)NCBICelera
Cytogenetic Map15p12NCBI
MIR598
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38811,035,206 - 11,035,302 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl811,035,206 - 11,035,302 (-)EnsemblGRCh38hg38GRCh38
GRCh37810,892,716 - 10,892,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,930,125 - 10,930,221 (-)NCBINCBI36Build 36hg18NCBI36
Celera810,020,573 - 10,020,669 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef89,822,679 - 9,822,775 (-)NCBIHuRef
CHM1_1810,957,969 - 10,958,065 (-)NCBICHM1_1
T2T-CHM13v2.088,703,709 - 8,703,805 (+)NCBIT2T-CHM13v2.0
Mir598
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,964,638 - 63,964,716 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,964,638 - 63,964,716 (+)EnsemblGRCm39 Ensembl
GRCm381463,727,189 - 63,727,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,727,189 - 63,727,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,346,026 - 64,346,104 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1461,503,646 - 61,503,724 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.34NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_032286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000073058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1547,057,496 - 47,057,575 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1537,962,692 - 37,962,771 (+)Ensembl
RefSeq Acc Id: NR_032286
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,138,609 - 42,138,687 (+)NCBI
mRatBN7.21537,962,692 - 37,962,770 (+)NCBI
Rnor_6.01547,057,496 - 47,057,574 (+)NCBI
Rnor_5.01550,816,188 - 50,816,266 (+)NCBI
Celera1537,645,076 - 37,645,154 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325416 AgrOrtholog
BioCyc Gene G2FUF-13409 BioCyc
Ensembl Genes ENSRNOG00000046841 Ensembl
  ENSRNOG00000067234 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000119544 ENTREZGENE
miRBase MI0006155 ENTREZGENE
NCBI Gene 100314206 ENTREZGENE
PhenoGen Mir598 PhenoGen
RatGTEx ENSRNOG00000046841 RatGTEx
  ENSRNOG00000067234 RatGTEx
RNAcentral URS00000B053C RNACentral
  URS000075A301 RNACentral
  URS000075E33D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-01 Mir598  microRNA 598  Mir598  microRNA 598  Data merged from RGD:149736100 737654 PROVISIONAL
2021-08-09 Mir598  microRNA 598      Symbol and Name status set to provisional 45752 PROVISIONAL
2015-04-09 Mir598  microRNA 598  Mir598  microRNA mir-598  Name updated 61478 APPROVED
2010-06-02 Mir598  microRNA mir-598      Symbol and Name status set to provisional 70820 PROVISIONAL