Mir328 (microRNA 328) - Rat Genome Database

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Gene: Mir328 (microRNA 328) Rattus norvegicus
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Symbol: Mir328
Name: microRNA 328
RGD ID: 2325404
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing translational repressor activity. Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to act upstream of or within long-term synaptic potentiation. Predicted to be located in extracellular exosome. Predicted to be part of RISC complex. Orthologous to human MIR328 (microRNA 328); INTERACTS WITH bleomycin A2; cadmium atom; cadmium dichloride.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-328; Mir328a; rno-mir-328; rno-mir-328a
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,094,691 - 50,094,774 (-)NCBIGRCr8
mRatBN7.21933,184,766 - 33,184,849 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,184,766 - 33,184,849 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,000,370 - 40,000,453 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,653,689 - 40,653,772 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01942,942,628 - 42,942,711 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,263,199 - 37,263,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,263,199 - 37,263,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,128,921 - 48,129,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1932,613,542 - 32,613,625 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:16381832   PMID:17604727   PMID:20403161   PMID:23185045   PMID:25858512   PMID:27444122   PMID:28544404   PMID:29689549   PMID:30660685   PMID:31164635   PMID:32271449  
PMID:32678010   PMID:34918065   PMID:36191794   PMID:37567011  


Genomics

Comparative Map Data
Mir328
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,094,691 - 50,094,774 (-)NCBIGRCr8
mRatBN7.21933,184,766 - 33,184,849 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,184,766 - 33,184,849 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,000,370 - 40,000,453 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,653,689 - 40,653,772 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01942,942,628 - 42,942,711 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,263,199 - 37,263,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,263,199 - 37,263,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,128,921 - 48,129,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1932,613,542 - 32,613,625 (-)NCBICelera
Cytogenetic Map19q11NCBI
MIR328
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,202,321 - 67,202,395 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,202,321 - 67,202,395 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,236,224 - 67,236,298 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1651,744,456 - 51,744,530 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,109,401 - 53,109,475 (-)NCBIHuRef
CHM1_11668,643,553 - 68,643,627 (-)NCBICHM1_1
T2T-CHM13v2.01672,996,605 - 72,996,679 (-)NCBIT2T-CHM13v2.0
Mir328
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,034,996 - 106,035,092 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,034,996 - 106,035,092 (-)EnsemblGRCm39 Ensembl
GRCm388105,308,364 - 105,308,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,308,364 - 105,308,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,832,264 - 107,832,360 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera8109,531,513 - 109,531,609 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:40272
Count of gene targets:13913
Count of transcripts:15435
Interacting mature miRNAs:rno-miR-328a-3p, rno-miR-328a-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat

Markers in Region
RH131523  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,186,165 - 33,186,366 (+)MAPPERmRatBN7.2
Rnor_6.01937,264,599 - 37,264,799NCBIRnor6.0
Rnor_5.01948,130,321 - 48,130,521UniSTSRnor5.0
RGSC_v3.41935,123,954 - 35,124,154UniSTSRGSC3.4
RH 3.4 Map19363.01UniSTS
Cytogenetic Map19q11UniSTS
BI292813  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,186,678 - 33,186,842 (+)MAPPERmRatBN7.2
Rnor_6.01937,265,112 - 37,265,275NCBIRnor6.0
Rnor_5.01948,130,834 - 48,130,997UniSTSRnor5.0
RGSC_v3.41935,124,467 - 35,124,630UniSTSRGSC3.4
RH 3.4 Map19276.21UniSTS
Cytogenetic Map19q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 8 2 11 2 2 5 10 8
Below cutoff 1 3 3 1 1 1 1

Sequence


RefSeq Acc Id: ENSRNOT00000054525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,184,766 - 33,184,849 (-)Ensembl
Rnor_6.0 Ensembl1937,263,199 - 37,263,282 (-)Ensembl
RefSeq Acc Id: NR_031775
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,094,691 - 50,094,774 (-)NCBI
mRatBN7.21933,184,766 - 33,184,849 (-)NCBI
Rnor_6.01937,263,199 - 37,263,282 (-)NCBI
Rnor_5.01948,128,921 - 48,129,004 (-)NCBI
Celera1932,613,542 - 32,613,625 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325404 AgrOrtholog
BioCyc Gene G2FUF-5837 BioCyc
Ensembl Genes ENSRNOG00000036413 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000054525 ENTREZGENE
miRBase MI0000602 ENTREZGENE
NCBI Gene 100314218 ENTREZGENE
PhenoGen Mir328 PhenoGen
RatGTEx ENSRNOG00000036413 RatGTEx
RNAcentral URS00005FDE70 RNACentral
  URS000067EC64 RNACentral
  URS000075B66B RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir328  microRNA 328  Mir328  microRNA mir-328  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir328  microRNA mir-328      Symbol and Name status set to provisional 70820 PROVISIONAL