Mir532 (microRNA 532) - Rat Genome Database

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Gene: Mir532 (microRNA 532) Rattus norvegicus
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Symbol: Mir532
Name: microRNA 532
RGD ID: 2325358
Description: Predicted to act upstream of or within cellular response to glucose stimulus; cellular response to leukemia inhibitory factor; and sensory perception of sound. Predicted to be part of RISC complex. Orthologous to human MIR532 (microRNA 532); INTERACTS WITH atrazine; bisphenol A; bleomycin A2.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-532; rno-mir-532
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X15,247,315 - 15,247,393 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX15,247,315 - 15,247,393 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX20,063,484 - 20,063,562 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,019,748 - 20,019,826 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,284,713 - 16,284,791 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X16,109,870 - 16,109,948 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX16,109,870 - 16,109,948 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,894,994 - 16,895,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX15,326,646 - 15,326,724 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
RISC complex  (ISO)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:17604727   PMID:20403161   PMID:20417623   PMID:20439489   PMID:23185045   PMID:23646144   PMID:26208845   PMID:29958954   PMID:32446365   PMID:32464126   PMID:33867350  
PMID:34464885   PMID:36116109  


Genomics

Comparative Map Data
Mir532
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X15,247,315 - 15,247,393 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX15,247,315 - 15,247,393 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX20,063,484 - 20,063,562 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,019,748 - 20,019,826 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,284,713 - 16,284,791 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X16,109,870 - 16,109,948 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX16,109,870 - 16,109,948 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,894,994 - 16,895,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX15,326,646 - 15,326,724 (+)NCBICelera
Cytogenetic MapXq12NCBI
MIR532
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X50,003,148 - 50,003,238 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX50,003,148 - 50,003,238 (+)EnsemblGRCh38hg38GRCh38
GRCh37X49,767,754 - 49,767,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X49,654,493 - 49,654,583 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic MapXp11.23NCBI
HuRefX47,237,700 - 47,237,790 (+)NCBIHuRef
CHM1_1X49,847,542 - 49,847,632 (+)NCBICHM1_1
T2T-CHM13v2.0X49,319,079 - 49,319,169 (+)NCBIT2T-CHM13v2.0
Mir532
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,114,641 - 7,114,736 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,114,641 - 7,114,736 (-)EnsemblGRCm39 Ensembl
GRCm38X7,248,402 - 7,248,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,248,402 - 7,248,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X6,825,528 - 6,825,623 (-)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX4,223,339 - 4,223,434 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.25NCBI
MIR532
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,774,680 - 42,774,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,774,680 - 42,774,738 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX17,152,035 - 17,152,093 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,915,510 - 42,915,568 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,915,510 - 42,915,568 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,899,698 - 42,899,756 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,886,953 - 42,887,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,981,829 - 42,981,887 (+)NCBIUU_Cfam_GSD_1.0
MIR532
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,705,258 - 43,705,337 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,705,258 - 43,705,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,632,025 - 48,632,104 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:8714
Count of gene targets:5486
Count of transcripts:5911
Interacting mature miRNAs:rno-miR-532-3p, rno-miR-532-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 5 17 6 14 6 3 3 1 2 8 5 3
Below cutoff 3 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_032285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000054368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX15,247,315 - 15,247,393 (+)Ensembl
Rnor_6.0 EnsemblX16,109,870 - 16,109,948 (+)Ensembl
RefSeq Acc Id: NR_032285
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X15,247,315 - 15,247,393 (+)NCBI
Rnor_6.0X16,109,870 - 16,109,948 (+)NCBI
Rnor_5.0X16,894,994 - 16,895,072 (+)NCBI
CeleraX15,326,646 - 15,326,724 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325358 AgrOrtholog
BioCyc Gene G2FUF-2894 BioCyc
Ensembl Genes ENSRNOG00000036245 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000054368 ENTREZGENE
miRBase MI0006154 ENTREZGENE
NCBI Gene 100314265 ENTREZGENE
PhenoGen Mir532 PhenoGen
RatGTEx ENSRNOG00000036245 RatGTEx
RNAcentral URS00004B4B85 RNACentral
  URS000075CDB2 RNACentral
  URS000075D27A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir532  microRNA 532  Mir532  microRNA mir-532  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir532  microRNA mir-532      Symbol and Name status set to provisional 70820 PROVISIONAL