Cd209fl1 (CD209f molecule like 1) - Rat Genome Database

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Gene: Cd209fl1 (CD209f molecule like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cd209fl1 (Ensembl: LOC100363064)
Name: CD209f molecule like 1 (Ensembl:rCG58956-like)
RGD ID: 2324825
Description: Predicted to enable carbohydrate binding activity. Predicted to be active in external side of plasma membrane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD209 antigen-like protein E; LOC100363064; rCG58956-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,223,998 - 7,226,919 (-)NCBIGRCr8
mRatBN7.2122,426,148 - 2,429,043 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl122,426,421 - 2,428,961 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0122,716,294 - 2,719,334 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,716,376 - 2,719,073 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,869,110 - 4,872,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4121,716,771 - 1,719,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera124,245,526 - 4,248,406 (-)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Cd209fl1
14 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:86
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000042857
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 4 2 4 5 6 4
Below cutoff 18 11 2 8 2 3 5 16 7 17 7 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000042857   ⟹   ENSRNOP00000041477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl122,426,421 - 2,428,961 (-)Ensembl
Rnor_6.0 Ensembl122,716,376 - 2,719,073 (+)Ensembl
RefSeq Acc Id: XM_039089888   ⟹   XP_038945816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,223,998 - 7,226,919 (-)NCBI
mRatBN7.2122,426,148 - 2,429,043 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038945816 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL74976 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041477
  ENSRNOP00000041477.5
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000041477   ⟸   ENSRNOT00000042857
RefSeq Acc Id: XP_038945816   ⟸   XM_039089888
- UniProtKB: A6KQ49 (UniProtKB/TrEMBL)
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LYU9-F1-model_v2 AlphaFold F1LYU9 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324825 AgrOrtholog
BioCyc Gene G2FUF-20361 BioCyc
Ensembl Genes ENSRNOG00000001027 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042857.5 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene 100363064 ENTREZGENE
PANTHER CD209 ANTIGEN-LIKE PROTEIN C-LIKE UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Cd209fl1 PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001027 RatGTEx
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A6KQ49 ENTREZGENE, UniProtKB/TrEMBL
  F1LYU9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cd209fl1  CD209f molecule like 1  LOC100363064  rCG58956-like  Symbol and Name Changed 1299863 APPROVED
2010-05-12 LOC100363064  rCG58956-like      Symbol and Name status set to provisional 70820 PROVISIONAL