H2al2l (H2A histone family member L2 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: H2al2l (H2A histone family member L2 like) Rattus norvegicus
Analyze
Symbol: H2al2l
Name: H2A histone family member L2 like
RGD ID: 2324719
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: histone H2A-Bbd type 1; histone variant H2al2-like; LOC100363171; uncharacterized protein LOC100363171
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X16,135,546 - 16,136,037 (-)NCBIGRCr8
mRatBN7.2X13,463,053 - 13,463,544 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X14,506,857 - 14,507,895 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X15,287,498 - 15,288,585 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X25,615,218 - 25,615,814 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX13,960,155 - 13,961,193 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat

Markers in Region
RH130134  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X13,463,071 - 13,463,278 (-)MAPPERmRatBN7.2
Rnor_6.0X14,507,670 - 14,507,876NCBIRnor6.0
Rnor_5.0X15,288,360 - 15,288,566UniSTSRnor5.0
RGSC_v3.4X25,615,237 - 25,615,443UniSTSRGSC3.4
CeleraX13,960,968 - 13,961,174UniSTS
RH 3.4 MapX121.7UniSTS
Cytogenetic MapXq13UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001409118   ⟹   NP_001396047
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,135,546 - 16,136,037 (-)NCBI
mRatBN7.2X13,463,053 - 13,463,544 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001396047 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001396047   ⟸   NM_001409118


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2976 BioCyc
NCBI Gene 100363171 ENTREZGENE
PhenoGen H2al2l PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 H2al2l  H2A histone family member L2 like  LOC100363171  histone variant H2al2-like  Symbol and Name Changed 1299863 APPROVED
2010-05-12 LOC100363171  histone variant H2al2-like      Symbol and Name status set to provisional 70820 PROVISIONAL