LOC100362110 (LRRGT00155-like) - Rat Genome Database

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Gene: LOC100362110 (LRRGT00155-like) Rattus norvegicus
Analyze
Symbol: LOC100362110
Name: LRRGT00155-like
RGD ID: 2324561
Description:
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC100362110; LRRGT00155; uncharacterized protein LOC100362110
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21336,907,760 - 36,941,966 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1336,907,760 - 36,941,966 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1339,507,408 - 39,541,657 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01340,795,415 - 40,829,663 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02136,434,423 - 136,434,769 (-)NCBIRnor_WKY
UTH_Rnor_WKY_Bbb_1.01338,058,146 - 38,088,651 (+)NCBIRnor_WKY
Rnor_6.01341,802,547 - 41,836,153 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1341,802,697 - 41,836,153 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01346,914,304 - 46,947,910 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41337,969,327 - 38,004,597 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1336,714,025 - 36,746,531 (+)NCBICelera
Cytogenetic Map13q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1371052  


Genomics

Variants

.
Variants in LOC100362110
271 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:105
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000046719
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61453Pur1Proteinuria QTL 118.06urine total protein amount (VT:0000032)urine protein level (CMO:0000591)133453521837415726Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
2292232Pur16Proteinuria QTL 1617.2urine total protein amount (VT:0000032)urine protein level (CMO:0000591)133615572341961389Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 26 11 11 3 11 2 66 26 30 3
Below cutoff 10 40 26 15 26 3 4 5 6 11 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000046719   ⟹   ENSRNOP00000048798
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1336,907,760 - 36,941,966 (+)Ensembl
Rnor_6.0 Ensembl1341,802,697 - 41,836,153 (+)Ensembl
RefSeq Acc Id: NM_001177819   ⟹   NP_001171290
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21336,907,760 - 36,941,966 (+)NCBI
Rnor_6.01341,802,547 - 41,836,153 (+)NCBI
Rnor_5.01346,914,304 - 46,947,910 (+)NCBI
Celera1336,714,025 - 36,746,531 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001171290 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC60655 (Get FASTA)   NCBI Sequence Viewer  
  AAS66246 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001171290   ⟸   NM_001177819
- UniProtKB: Q6QI53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000048798   ⟸   ENSRNOT00000046719
Protein Domains
DUF1725

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7E4S0-F1-model_v2 AlphaFold F7E4S0 1-499 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-18454 BioCyc
Ensembl Genes ENSRNOG00000030481 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000048798 ENTREZGENE
  ENSRNOP00000048798.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046719 ENTREZGENE
  ENSRNOT00000046719.3 UniProtKB/TrEMBL
InterPro DUF1725 UniProtKB/TrEMBL
KEGG Report rno:100362110 UniProtKB/TrEMBL
NCBI Gene 100362110 ENTREZGENE
PANTHER LINE-1 RETROTRANSPOSABLE ELEMENT ORF2 PROTEIN UniProtKB/TrEMBL
  REVERSE TRANSCRIPTASES UniProtKB/TrEMBL
Pfam DUF1725 UniProtKB/TrEMBL
PhenoGen LOC100362110 PhenoGen
UniProt Q6QI53 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7E4S0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-06 LOC100362110  LRRGT00155-like      Symbol and Name status set to provisional 70820 PROVISIONAL