Trdcl (T cell receptor delta constant like) - Rat Genome Database

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Gene: Trdcl (T cell receptor delta constant like) Rattus norvegicus
Analyze
Symbol: Trdcl
Name: T cell receptor delta constant like
RGD ID: 2323935
Description:
Type: gene
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC100362843; LOC100362843; LOC102546567; LOC102555772; T cell receptor V delta 6; T-cell receptor alpha chain V region HPB-MLT-like; uncharacterized LOC102555772; uncharacterized protein LOC102546567
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,548,293 - 31,556,933 (+)NCBIGRCr8
mRatBN7.21526,195,630 - 27,586,889 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01532,762,979 - 32,777,742 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01536,325,035 - 36,326,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41531,929,862 - 31,930,852 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1527,154,269 - 27,169,027 (+)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Trdcl
32639 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat

Markers in Region
RH138044  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21527,328,379 - 27,328,509 (+)MAPPERmRatBN7.2
Rnor_6.01532,516,106 - 32,516,235NCBIRnor6.0
Rnor_5.01536,325,953 - 36,326,082UniSTSRnor5.0
RGSC_v3.41531,930,712 - 31,930,841UniSTSRGSC3.4
Celera1526,910,660 - 26,910,789UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_002728265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_002728265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41531,929,862 - 31,930,852 (+)RGD

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13887 BioCyc
NCBI Gene 100362843 ENTREZGENE
PhenoGen Trdcl PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Trdcl  T cell receptor delta constant like  LOC100362843  hypothetical protein LOC100362843  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100362843  hypothetical protein LOC100362843  LOC102546567  T-cell receptor alpha chain V region HPB-MLT-like  Data merged from RGD:11051974 737654 PROVISIONAL
2016-04-12 LOC102546567  T-cell receptor alpha chain V region HPB-MLT-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-07-29 LOC100362843  hypothetical protein LOC100362843  LOC102555772  uncharacterized LOC102555772  Data merged from RGD:7749078 737654 PROVISIONAL
2013-12-18 LOC102555772  uncharacterized LOC102555772      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100362843  hypothetical protein LOC100362843      Symbol and Name status set to provisional 70820 PROVISIONAL