Nktr (natural killer cell triggering receptor) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Nktr (natural killer cell triggering receptor) Rattus norvegicus
Analyze
Symbol: Nktr
Name: natural killer cell triggering receptor
RGD ID: 2321593
Description: Predicted to have cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to localize to cytoplasm and nucleus. Orthologous to human NKTR (natural killer cell triggering receptor); INTERACTS WITH bisphenol A; endosulfan; valproic acid.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100364165; natural killer tumor recognition sequence-like; natural killer-tumor recognition sequence
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28121,380,010 - 121,420,495 (+)NCBI
Rnor_6.0 Ensembl8130,366,775 - 130,393,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08130,357,464 - 130,395,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08129,548,466 - 129,575,260 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8120,526,082 - 120,554,918 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:20676357  


Genomics

Comparative Map Data
Nktr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28121,380,010 - 121,420,495 (+)NCBI
Rnor_6.0 Ensembl8130,366,775 - 130,393,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08130,357,464 - 130,395,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08129,548,466 - 129,575,260 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8120,526,082 - 120,554,918 (+)NCBICelera
Cytogenetic Map8q32NCBI
NKTR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl342,600,655 - 42,648,735 (+)EnsemblGRCh38hg38GRCh38
GRCh38342,600,007 - 42,648,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37342,642,178 - 42,690,227 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,617,151 - 42,665,237 (+)NCBINCBI36hg18NCBI36
Build 34342,617,109 - 42,665,031NCBI
Celera342,582,557 - 42,630,629 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef342,687,709 - 42,735,868 (+)NCBIHuRef
CHM1_1342,593,339 - 42,641,411 (+)NCBICHM1_1
Nktr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,542,244 - 121,585,908 (+)NCBIGRCm39mm39
GRCm39 Ensembl9121,548,235 - 121,585,909 (+)Ensembl
GRCm389121,713,881 - 121,756,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,719,169 - 121,756,843 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,628,299 - 121,665,959 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,567,879 - 121,605,539 (+)NCBImm8
Celera9122,192,346 - 122,230,008 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.57NCBI
Nktr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,150,386 - 28,193,735 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,148,040 - 28,193,734 (-)NCBIChiLan1.0ChiLan1.0
NKTR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1343,571,020 - 43,620,555 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl343,571,457 - 43,617,801 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0342,506,135 - 42,556,343 (+)NCBIMhudiblu_PPA_v0panPan3
NKTR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,728,841 - 11,780,306 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2311,728,994 - 11,778,626 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,703,200 - 11,755,987 (+)NCBI
ROS_Cfam_1.02312,018,314 - 12,071,116 (+)NCBI
UMICH_Zoey_3.12311,820,318 - 11,873,117 (+)NCBI
UNSW_CanFamBas_1.02311,962,566 - 12,015,275 (+)NCBI
UU_Cfam_GSD_1.02311,966,512 - 12,019,317 (+)NCBI
Nktr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,106,220 - 200,153,036 (-)NCBI
SpeTri2.0NW_0049366952,458,555 - 2,505,556 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NKTR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,125,072 - 26,174,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,125,064 - 26,176,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,792,191 - 28,844,107 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NKTR
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,055,400 - 4,104,947 (+)NCBI
ChlSab1.1 Ensembl224,056,193 - 4,102,182 (+)Ensembl
Nktr
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473077,039,359 - 77,081,204 (-)NCBI

Position Markers
BF386253  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,414,220 - 121,414,386 (+)MAPPER
Rnor_6.08130,389,151 - 130,389,316NCBIRnor6.0
Rnor_5.08129,568,986 - 129,569,151UniSTSRnor5.0
Celera8120,548,644 - 120,548,809UniSTS
RH 3.4 Map81256.1UniSTS
Cytogenetic Map8q32UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)889058229132243842Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8100873811133307652Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8100873811133307652Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102051964133307652Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8104682575133307652Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)8104682575133307652Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:17
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000071152
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 52 36 19 36 8 8 74 35 40 11 8
Low 3 5 5 5 3 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008757888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008757889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008757891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008757892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008757893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000071152   ⟹   ENSRNOP00000066054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8130,366,775 - 130,393,178 (+)Ensembl
RefSeq Acc Id: XM_008757888   ⟹   XP_008756110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,526,082 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008757889   ⟹   XP_008756111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,526,082 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008757891   ⟹   XP_008756113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,527,298 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008757892   ⟹   XP_008756114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,526,542 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008757893   ⟹   XP_008756115
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,526,542 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596195   ⟹   XP_017451684
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08130,357,464 - 130,395,425 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603744   ⟹   XP_017459233
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,526,082 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603745   ⟹   XP_017459234
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,526,542 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603746   ⟹   XP_017459235
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera8120,527,269 - 120,554,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039082739   ⟹   XP_038938667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,141 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082740   ⟹   XP_038938668
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,141 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082741   ⟹   XP_038938669
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,141 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082742   ⟹   XP_038938670
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,141 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082743   ⟹   XP_038938671
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,637 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082744   ⟹   XP_038938672
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,392,094 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082745   ⟹   XP_038938673
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,392,804 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082746   ⟹   XP_038938674
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,392,770 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082747   ⟹   XP_038938675
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,392,094 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082748   ⟹   XP_038938676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,392,094 - 121,420,495 (+)NCBI
RefSeq Acc Id: XM_039082750   ⟹   XP_038938678
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,139 - 121,405,154 (+)NCBI
RefSeq Acc Id: XR_005488592
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,140 - 121,411,959 (+)NCBI
RefSeq Acc Id: XR_005488593
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,380,010 - 121,408,191 (+)NCBI
RefSeq Acc Id: XR_005488594
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,139 - 121,405,154 (+)NCBI
RefSeq Acc Id: XR_005488595
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,382,139 - 121,405,364 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_008756110   ⟸   XM_008757888
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008756111   ⟸   XM_008757889
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008756113   ⟸   XM_008757891
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008756114   ⟸   XM_008757892
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008756115   ⟸   XM_008757893
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017459233   ⟸   XM_017603744
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017459234   ⟸   XM_017603745
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017459235   ⟸   XM_017603746
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451684   ⟸   XM_017596195
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000066054   ⟸   ENSRNOT00000071152
RefSeq Acc Id: XP_038938678   ⟸   XM_039082750
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038938667   ⟸   XM_039082739
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938668   ⟸   XM_039082740
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938669   ⟸   XM_039082741
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938670   ⟸   XM_039082742
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938671   ⟸   XM_039082743
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038938675   ⟸   XM_039082747
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938676   ⟸   XM_039082748
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938672   ⟸   XM_039082744
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938674   ⟸   XM_039082746
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938673   ⟸   XM_039082745
- Peptide Label: isoform X6
Protein Domains
PPIase cyclophilin-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2321593 AgrOrtholog
Ensembl Genes ENSRNOG00000049128 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000066054 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071152 UniProtKB/TrEMBL
Gene3D-CATH 2.40.100.10 UniProtKB/TrEMBL
InterPro Cyclophilin-like_dom UniProtKB/TrEMBL
  Cyclophilin-like_PPIase_dom UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_CS UniProtKB/TrEMBL
NCBI Gene 100364165 ENTREZGENE
Pfam Pro_isomerase UniProtKB/TrEMBL
PhenoGen Nktr PhenoGen
PRINTS CSAPPISMRASE UniProtKB/TrEMBL
PROSITE CSA_PPIASE_1 UniProtKB/TrEMBL
  CSA_PPIASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF50891 UniProtKB/TrEMBL
UniProt M0R991_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-04 Nktr  natural killer cell triggering receptor  Nktr  natural killer-tumor recognition sequence  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-07 Nktr  natural killer-tumor recognition sequence  LOC100364165  natural killer tumor recognition sequence-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100364165  natural killer tumor recognition sequence-like      Symbol and Name status set to provisional 70820 PROVISIONAL